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Sample GSM327238 Query DataSets for GSM327238
Status Public on Oct 08, 2008
Title control retina T12-sample2
Sample type RNA
Source name lesioned retina 12hrs after light onset
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from lesioned retina 12hrs after light onset.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
VALUE RMA-calculated Signal intensity

Data table
AFFX-BioB-3_at 9.221523285
AFFX-BioB-5_at 9.008499146
AFFX-BioB-M_at 9.737746239
AFFX-BioC-3_at 9.376079559
AFFX-BioC-5_at 10.07300472
AFFX-BioDn-3_at 11.6049118
AFFX-BioDn-5_at 10.66744232
AFFX-CreX-3_at 13.09327698
AFFX-CreX-5_at 12.73344994
AFFX-DapX-3_at 2.099627256
AFFX-DapX-5_at 2.119051695
AFFX-DapX-M_at 2.286601305
AFFX-Dr-AB076373-1_at 2.562420607
AFFX-Dr-acta1-3_at 3.188229322
AFFX-Dr-acta1-5_at 5.052619457
AFFX-Dr-acta1-5_x_at 5.017310143
AFFX-Dr-acta1-M_at 2.197521925
AFFX-Dr-AF292559-1_at 2.255269051
AFFX-Dr-AF292559-2_s_at 1.613300443
AFFX-Dr-AF292559-3_s_at 1.969768286

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.

Supplementary file Size Download File type/resource
GSM327238.CEL.gz 1.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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