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Sample GSM327239 Query DataSets for GSM327239
Status Public on Oct 08, 2008
Title control retina T12-sample3
Sample type RNA
 
Source name lesioned retina 12hrs after light onset
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
 
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from lesioned retina 12hrs after light onset.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
 
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
E-mail(s) peterh@umich.edu
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
 
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
ID_REF
VALUE RMA-calculated Signal intensity

Data table
ID_REF VALUE
AFFX-BioB-3_at 8.976946831
AFFX-BioB-5_at 8.568279266
AFFX-BioB-M_at 9.454665184
AFFX-BioC-3_at 9.292818069
AFFX-BioC-5_at 9.930024147
AFFX-BioDn-3_at 11.5041914
AFFX-BioDn-5_at 10.6349535
AFFX-CreX-3_at 13.484375
AFFX-CreX-5_at 12.89924717
AFFX-DapX-3_at 2.26641798
AFFX-DapX-5_at 1.934514165
AFFX-DapX-M_at 2.155935287
AFFX-Dr-AB076373-1_at 2.297372818
AFFX-Dr-acta1-3_at 6.123205185
AFFX-Dr-acta1-5_at 5.239041328
AFFX-Dr-acta1-5_x_at 4.901226521
AFFX-Dr-acta1-M_at 2.414206028
AFFX-Dr-AF292559-1_at 2.268332243
AFFX-Dr-AF292559-2_s_at 1.800468802
AFFX-Dr-AF292559-3_s_at 2.028008938

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.




Supplementary file Size Download File type/resource
GSM327239.CEL.gz 1.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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