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Sample GSM327242 Query DataSets for GSM327242
Status Public on Oct 08, 2008
Title control retina T24-sample3
Sample type RNA
Source name lesioned retina 24hrs after light onset
Organism Danio rerio
Characteristics wild type, adult Danio retina
Extracted molecule total RNA
Extraction protocol Pico Pure isolation kit (Arcturus, Molecular Devices Corporation)
Label biotin
Label protocol mRNA was amplified from total RNA using the RiboAmp HS RNA amplification kit (Arcturus, Molecular Devices Corporation.
Hybridization protocol Following fragmentation, 5ug of cRNA were hybridized on GeneChip Zebrafish Array. GeneChips were washed and stained in the Affymetrix Fluidics Station.
Scan protocol GeneChips were scanned using the Affymetrix GeneChip Scanner 3000.
Description Gene Expression from lesioned retina 24hrs after light onset.
Data processing The data were analyzed with BRB Array Tools 3.6 using default analysis settings and global scaling for RMA normalization.
Submission date Oct 06, 2008
Last update date Oct 07, 2008
Contact name Peter F. Hitchcock
Phone 734-763-8169
Fax 734-936-7231
Organization name University of Michigan
Department Ophthy and Vis Sci
Street address 1000 Wall Street
City Ann Arbor
State/province MI
ZIP/Postal code 48104
Country USA
Platform ID GPL1319
Series (1)
GSE13068 Identification of the molecular signatures integral to regenerating photoreceptors in the retina of the zebrafish

Data table header descriptions
VALUE RMA-calculated Signal intensity

Data table
AFFX-BioB-3_at 9.021623611
AFFX-BioB-5_at 9.152819633
AFFX-BioB-M_at 9.699997902
AFFX-BioC-3_at 9.361995697
AFFX-BioC-5_at 10.04154491
AFFX-BioDn-3_at 11.69351959
AFFX-BioDn-5_at 10.73434258
AFFX-CreX-3_at 13.35386086
AFFX-CreX-5_at 12.93426418
AFFX-DapX-3_at 2.349805832
AFFX-DapX-5_at 2.408447742
AFFX-DapX-M_at 2.291518211
AFFX-Dr-AB076373-1_at 2.267703056
AFFX-Dr-acta1-3_at 3.721628666
AFFX-Dr-acta1-5_at 5.970581532
AFFX-Dr-acta1-5_x_at 4.892706871
AFFX-Dr-acta1-M_at 1.966145277
AFFX-Dr-AF292559-1_at 2.484630108
AFFX-Dr-AF292559-2_s_at 1.857777357
AFFX-Dr-AF292559-3_s_at 1.862893105

Total number of rows: 15617

Table truncated, full table size 436 Kbytes.

Supplementary file Size Download File type/resource
GSM327242.CEL.gz 1.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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