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Sample GSM3351326 Query DataSets for GSM3351326
Status Public on Aug 29, 2018
Title PBMC + #1 abs
Sample type RNA
 
Source name PBMC + #1 abs, co-cultured for 48 hr
Organism Homo sapiens
Characteristics cell type: PBMC
disease state: healthy
Treatment protocol PBMC + Rat IgG, 100 ng/mL PBMC + #1 abs, 100 ng/mL PBMC + OKT-3, 100 ng/mL
Growth protocol PBMC, 2 X 10^6/well + Rat IgG, 100 ng/mL, co-cultured for 48 hr PBMC, 2 X 10^6/well + #1 abs, 100 ng/mL, co-cultured for 48 hr PBMC, 2 X 10^6/well + OKT-3, 100 ng/mL, co-cultured for 48 hr
Extracted molecule total RNA
Extraction protocol The total RNA of (1) PBMC + Rat IgG, (2) PBMC + #1 abs, and (3) PBMC + OKT-3 were extracted by High Pure RNA Isolation Kit (Roche) after the cells were incubated for 48 hr.
Label biotin
Label protocol We followed protocol of manual that is GeneChip® WT PLUS Reagent Kit User Manual.
 
Hybridization protocol We followed protocol of manual that is GeneChip® WT PLUS Reagent Kit User Manual.
Scan protocol We followed manufacturer's protocol, and used GeneChip® Scanner 3000 7G.
Description PBMC, collected from a healthy donor + #1 abs, novel T-cell suppressive antibody (another name 20-2b2 antibody, host: Rat)
Data processing Data acquisition and normalization (SST-RMA) were used Affymetrix® Expression Console™ Software.
 
Submission date Aug 22, 2018
Last update date Aug 29, 2018
Contact name Sunao Sugita
Organization name RIKEN Center for Developmental Biology
Department The Laboratory for Retinal Regeneration
Street address 2-2-3 Minatojima-minamimachi, Chuo-ku
City Kobe
ZIP/Postal code 650-0047
Country Japan
 
Platform ID GPL23159
Series (1)
GSE118925 Suppression of human T-cell activation by a novel anti-human CD3 antibody

Data table header descriptions
ID_REF
VALUE Normalized intensity.

Data table
ID_REF VALUE
TC0100006437.hg.1 24.30321
TC0100006476.hg.1 110.2552
TC0100006479.hg.1 171.2758
TC0100006480.hg.1 56.21399
TC0100006483.hg.1 130.1758
TC0100006486.hg.1 154.3483
TC0100006490.hg.1 68.17916
TC0100006492.hg.1 109.9928
TC0100006494.hg.1 133.3606
TC0100006497.hg.1 20.29275
TC0100006499.hg.1 124.3458
TC0100006501.hg.1 120.9944
TC0100006502.hg.1 29.62298
TC0100006514.hg.1 18.54779
TC0100006516.hg.1 108.0599
TC0100006517.hg.1 23.16799
TC0100006524.hg.1 41.20804
TC0100006540.hg.1 63.28486
TC0100006548.hg.1 17.77556
TC0100006550.hg.1 378.7469

Total number of rows: 24351

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM3351326_PBMC+_1_abs.CEL.gz 1.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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