GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM3351788 Query DataSets for GSM3351788
Status Public on Apr 15, 2020
Title patient SPN-13 xenograft B2
Sample type RNA
Source name distal lung stem cells
Organism Homo sapiens
Characteristics cell type: xenograft cells
genotype/variation: wild type
patient: SPN-13
Treatment protocol Not applicable.
Growth protocol Cultured stem cell colony on 3T3 feeder layer.
Extracted molecule total RNA
Extraction protocol For the stem cell colony RNA extraction, we have used Arcturus PicoPure RNA isolation kit and for ALI RNA, we have extracted RNA using Trizol and Qiagen RNeasy kit.
Label biotin
Label protocol Samples were enzymatically fragmented and biotinylated.
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit materials.
Scan protocol Affymetrix GeneChip Scanner 3000 7G.
Description SPN-13-Xeno-B2
Data processing Data were processed using Partek genomics suite software and RMA background correction were applied to probe intensities, then the corrected intensities were quantile normalized.
Submission date Aug 22, 2018
Last update date Apr 15, 2020
Contact name Frank McKeon
Phone 8608372486
Organization name University of Houston
Department Biology and Biochemistry
Street address 3455 Cullen Blvd
City Houston
State/province TX
ZIP/Postal code 77004
Country USA
Platform ID GPL5175
Series (1)
GSE118950 Pathogenic Stem Cell Variation in Chronic Lung Disease

Data table header descriptions
VALUE Normalized signal

Data table
3881686 6.4541
2672712 6.4945
2842570 6.21936
3526544 4.13128
2902531 4.66998
2402942 6.32103
3382216 5.17029
3771800 7.01993
2427469 5.73815
2392945 6.36453
2453006 9.28125
3552083 5.54073
3416651 4.74053
2562821 7.94472
3721851 5.99537
3442176 6.61804
2477438 4.51254
2926969 4.93057
3026969 6.31662
3796335 5.48631

Total number of rows: 22011

Table truncated, full table size 341 Kbytes.

Supplementary file Size Download File type/resource
GSM3351788_SPN-13-Xeno-B2.CEL.gz 21.6 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap