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Sample GSM3351789 Query DataSets for GSM3351789
Status Public on Apr 15, 2020
Title patient SPN-13 xenograft B5
Sample type RNA
 
Source name distal lung stem cells
Organism Homo sapiens
Characteristics cell type: xenograft cells
genotype/variation: wild type
patient: SPN-13
Treatment protocol Not applicable.
Growth protocol Cultured stem cell colony on 3T3 feeder layer.
Extracted molecule total RNA
Extraction protocol For the stem cell colony RNA extraction, we have used Arcturus PicoPure RNA isolation kit and for ALI RNA, we have extracted RNA using Trizol and Qiagen RNeasy kit.
Label biotin
Label protocol Samples were enzymatically fragmented and biotinylated.
 
Hybridization protocol Samples were hybridized using Affymetrix hybridization kit materials.
Scan protocol Affymetrix GeneChip Scanner 3000 7G.
Description SPN-13-Xeno-B5
Data processing Data were processed using Partek genomics suite software and RMA background correction were applied to probe intensities, then the corrected intensities were quantile normalized.
 
Submission date Aug 22, 2018
Last update date Apr 15, 2020
Contact name Frank McKeon
E-mail(s) mckeon.xian@gmail.com
Phone 8608372486
Organization name University of Houston
Department Biology and Biochemistry
Street address 3455 Cullen Blvd
City Houston
State/province TX
ZIP/Postal code 77004
Country USA
 
Platform ID GPL5175
Series (1)
GSE118950 Pathogenic Stem Cell Variation in Chronic Lung Disease

Data table header descriptions
ID_REF
VALUE Normalized signal

Data table
ID_REF VALUE
3881686 6.65817
2672712 6.82336
2842570 5.73523
3526544 3.93361
2902531 5.34674
2402942 6.94115
3382216 5.34292
3771800 7.00387
2427469 5.33538
2392945 6.77635
2453006 8.863
3552083 6.01308
3416651 5.21846
2562821 7.99113
3721851 5.86637
3442176 6.22031
2477438 6.21526
2926969 5.03639
3026969 5.89198
3796335 5.3056

Total number of rows: 22011

Table truncated, full table size 341 Kbytes.




Supplementary file Size Download File type/resource
GSM3351789_SPN-13-Xeno-B5.CEL.gz 21.2 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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