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Sample GSM335967 Query DataSets for GSM335967
Status Public on Oct 31, 2008
Title Foxa2-mutant-1-E7.5 (MOE 430 2.0)
Sample type RNA
 
Source name E7.5 EMBRYO EPIBLAST ONLY
Organism Mus musculus
Characteristics STRAIN: ICR
GENDER: MIXED
Treatment protocol EXTRA-EMBRYONIC REGION OF EMBRYO REMOVED PRIOR TO EXTRACTION
Extracted molecule total RNA
Extraction protocol TRIZOL REAGENT
Label biotin
Label protocol AFFYMETRIX GeneChip® T7-Oligo(dT) Promoter Primer Kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description E7.5 POOLED EMBRYOS: n=53; Stages between mid-streak and headfold according to Downs & Davies
Data processing Affymetrix MAS5.0, target normalized to 1000
 
Submission date Oct 22, 2008
Last update date Aug 28, 2018
Contact name Owen James Tamplin
Organization name University of Wisconsin-Madison
Department Cell and Regenerative Biology
Lab Tamplin
Street address 1111 Highland Ave
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Platform ID GPL1261
Series (1)
GSE5424 Microarray analysis of Foxa2 mutant mouse embryos
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 768.958 P 0.000662269
AFFX-BioB-M_at 1406.22 P 4.42873e-05
AFFX-BioB-3_at 731.737 P 8.14279e-05
AFFX-BioC-5_at 2057.27 P 8.14279e-05
AFFX-BioC-3_at 1819.01 P 4.42873e-05
AFFX-BioDn-5_at 2579.43 P 4.42873e-05
AFFX-BioDn-3_at 11278.4 P 6.02111e-05
AFFX-CreX-5_at 25292.2 P 5.16732e-05
AFFX-CreX-3_at 27432.4 P 4.42873e-05
AFFX-DapX-5_at 54.6422 A 0.131361
AFFX-DapX-M_at 41.1837 A 0.440641
AFFX-DapX-3_at 7.54631 A 0.941556
AFFX-LysX-5_at 23.1951 A 0.48511
AFFX-LysX-M_at 10.1242 A 0.814869
AFFX-LysX-3_at 21.4651 A 0.455413
AFFX-PheX-5_at 49.1068 A 0.41138
AFFX-PheX-M_at 3.75809 A 0.953518
AFFX-PheX-3_at 22.127 A 0.631562
AFFX-ThrX-5_at 28.3846 A 0.52976
AFFX-ThrX-M_at 19.0856 A 0.51489

Total number of rows: 45101

Table truncated, full table size 1373 Kbytes.




Supplementary file Size Download File type/resource
GSM335967.CEL.gz 3.7 Mb (ftp)(http) CEL
GSM335967.CHP.gz 242.7 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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