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Sample GSM335968 Query DataSets for GSM335968
Status Public on Oct 31, 2008
Title Foxa2-mutant-2-E7.5 (MOE 430 2.0)
Sample type RNA
 
Source name E7.5 EMBRYO EPIBLAST ONLY
Organism Mus musculus
Characteristics STRAIN: ICR
GENDER: MIXED
Treatment protocol EXTRA-EMBRYONIC REGION OF EMBRYO REMOVED PRIOR TO EXTRACTION
Extracted molecule total RNA
Extraction protocol TRIZOL REAGENT
Label biotin
Label protocol AFFYMETRIX GeneChip® T7-Oligo(dT) Promoter Primer Kit
 
Hybridization protocol Affymetrix
Scan protocol Affymetrix
Description E7.5 POOLED EMBRYOS: n=48; Stages between mid-streak and headfold according to Downs & Davies
Data processing Affymetrix MAS5.0, target normalized to 1000
 
Submission date Oct 22, 2008
Last update date Aug 28, 2018
Contact name Owen James Tamplin
Organization name University of Wisconsin-Madison
Department Cell and Regenerative Biology
Lab Tamplin
Street address 1111 Highland Ave
City Madison
State/province WI
ZIP/Postal code 53705
Country USA
 
Platform ID GPL1261
Series (1)
GSE5424 Microarray analysis of Foxa2 mutant mouse embryos
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 861.303 P 0.000856509
AFFX-BioB-M_at 1276.98 P 5.16732e-05
AFFX-BioB-3_at 669.868 P 7.00668e-05
AFFX-BioC-5_at 1869.4 P 7.00668e-05
AFFX-BioC-3_at 1659.39 P 5.16732e-05
AFFX-BioDn-5_at 2349.48 P 4.42873e-05
AFFX-BioDn-3_at 13173 P 5.16732e-05
AFFX-CreX-5_at 28989.8 P 5.16732e-05
AFFX-CreX-3_at 33843.4 P 4.42873e-05
AFFX-DapX-5_at 25.3891 A 0.617441
AFFX-DapX-M_at 51.2205 A 0.340661
AFFX-DapX-3_at 5.36793 A 0.916408
AFFX-LysX-5_at 46.3461 P 0.0464816
AFFX-LysX-M_at 5.40581 A 0.953518
AFFX-LysX-3_at 44.7469 A 0.123552
AFFX-PheX-5_at 4.35014 A 0.945787
AFFX-PheX-M_at 7.06637 A 0.883887
AFFX-PheX-3_at 28.7538 A 0.425962
AFFX-ThrX-5_at 33.4507 A 0.52976
AFFX-ThrX-M_at 8.30832 A 0.814869

Total number of rows: 45101

Table truncated, full table size 1370 Kbytes.




Supplementary file Size Download File type/resource
GSM335968.CEL.gz 3.6 Mb (ftp)(http) CEL
GSM335968.CHP.gz 242.3 Kb (ftp)(http) CHP
Processed data included within Sample table
Processed data provided as supplementary file

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