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Sample GSM336393 Query DataSets for GSM336393
Status Public on Dec 01, 2009
Title MCL Long SAGE Library 03-10133
Sample type SAGE
Anchor NlaIII
Tag Count 165410
Tag Length 17
 
Source name Lymph node Biopsy
Organism Homo sapiens
Characteristics Classic MCL
Extracted molecule total RNA
Extraction protocol Tissue sections were extracted in Invitrogen lysis/binding buffer as per I-SAGE protocol
 
Description none
Data processing Duplicate ditags have been removed prior to GEO submission
 
Submission date Oct 23, 2008
Last update date Sep 30, 2009
Contact name Ronald J deLeeuw
E-mail(s) rdeleeuw@bccrc.ca
Phone 6046758111
Fax 6046758232
Organization name BC Cancer Research Centre
Department Cancer Genetics
Lab Lam Lab
Street address 675 W. 10th Ave.
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL1485
Series (1)
GSE13331 Prognostic analysis of mantle cell lymphoma genomes

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
GTTGTGGTTAATCTGGT 1468 8874.92
CAATAAATGTTCTGGTT 1127 6813.37
AGGCTACGGAAACAGGC 1108 6698.51
TGTGTTGAGAGCTTCTC 929 5616.35
ATAATTCTTTGTATATA 888 5368.48
GTTCACATTAGAATAAA 887 5362.43
TTGGTGAAGGAAGAAGT 872 5271.75
TAATAAAGGTGTTTATT 750 4534.19
TTCATACACCTATCCCC 735 4443.50
TGATTTCACTTCCACTC 709 4286.32
GCAGCCATCCGCAGGGC 687 4153.32
GCTTTATTTGTTTTTTT 683 4129.13
GCATAATAGGTGTTAAA 671 4056.59
ACTTTTTCAAAAAAAAA 669 4044.50
TAGGTTGTCTAAAAATA 650 3929.63
CTAAGACTTCACCAGTC 646 3905.45
GAAAAATGGTTGATGGA 644 3893.36
GGATTTGGCCTTTTTGA 627 3790.58
CACAAACGGTAGTTTTG 612 3699.90
GAGGGAGTTTCATTAAA 604 3651.53

Total number of rows: 52429

Table truncated, full table size 1297 Kbytes.




Supplementary data files not provided

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