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GEO accession:
Sample GSM336393
Query DataSets for GSM336393
Status
Public on Dec 01, 2009
Title
MCL Long SAGE Library 03-10133
Sample type
SAGE
Anchor
NlaIII
Tag Count
165410
Tag Length
17
Source name
Lymph node Biopsy
Organism
Homo sapiens
Characteristics
Classic MCL
Extracted molecule
total RNA
Extraction protocol
Tissue sections were extracted in Invitrogen lysis/binding buffer as per I-SAGE protocol
Description
none
Data processing
Duplicate ditags have been removed prior to GEO submission
Submission date
Oct 23, 2008
Last update date
Sep 30, 2009
Contact name
Ronald J deLeeuw
E-mail(s)
rdeleeuw@bccrc.ca
Phone
6046758111
Fax
6046758232
Organization name
BC Cancer Research Centre
Department
Cancer Genetics
Lab
Lam Lab
Street address
675 W. 10th Ave.
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL1485
Series (1)
GSE13331
Prognostic analysis of mantle cell lymphoma genomes
Data table header descriptions
TAG
COUNT
TPM
tags per million
Data table
TAG
COUNT
TPM
GTTGTGGTTAATCTGGT
1468
8874.92
CAATAAATGTTCTGGTT
1127
6813.37
AGGCTACGGAAACAGGC
1108
6698.51
TGTGTTGAGAGCTTCTC
929
5616.35
ATAATTCTTTGTATATA
888
5368.48
GTTCACATTAGAATAAA
887
5362.43
TTGGTGAAGGAAGAAGT
872
5271.75
TAATAAAGGTGTTTATT
750
4534.19
TTCATACACCTATCCCC
735
4443.50
TGATTTCACTTCCACTC
709
4286.32
GCAGCCATCCGCAGGGC
687
4153.32
GCTTTATTTGTTTTTTT
683
4129.13
GCATAATAGGTGTTAAA
671
4056.59
ACTTTTTCAAAAAAAAA
669
4044.50
TAGGTTGTCTAAAAATA
650
3929.63
CTAAGACTTCACCAGTC
646
3905.45
GAAAAATGGTTGATGGA
644
3893.36
GGATTTGGCCTTTTTGA
627
3790.58
CACAAACGGTAGTTTTG
612
3699.90
GAGGGAGTTTCATTAAA
604
3651.53
Total number of rows:
52429
Table truncated, full table size
1297 Kbytes
.
Supplementary data files not provided
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