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Sample GSM33752 Query DataSets for GSM33752
Status Public on Oct 28, 2004
Title HCC003_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC003
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44077

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC003
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.425 0.745 1 1 1 310 152 147 107 643 170 303 330 0
1174364_1 2.437 5.414 1 1 2 6209 1681 141 99 2034 773 292 167 0
1175152_1 -0.123 0.918 1 1 3 345 129 140 92 633 343 286 93 0
1175940_1 0.536 1.449 1 1 4 666 377 140 83 865 415 301 240 0
1176716_1 0.921 1.893 1 1 5 839 256 146 233 874 234 305 226 0
1177504_1 -0.029 0.980 1 1 6 776 167 141 233 1312 246 305 372 0
1178580_1 1.418 2.671 1 1 7 1919 572 140 183 1343 426 308 411 0
1179356_1 0.154 1.113 1 1 8 339 157 140 196 587 141 309 227 0
1180144_1 0.593 1.509 1 1 9 534 224 136 81 717 233 307 184 0
1180932_1 -0.532 0.692 1 1 10 227 116 138 106 497 158 297 365 0
1181708_1 0.133 1.097 1 1 11 322 192 135 78 565 120 300 323 0
1182496_1 -1.080 0.473 1 1 12 202 105 132 95 530 208 300 130 0
1183572_1 0.507 1.422 1 1 13 514 371 139 108 719 193 309 110 0
1184348_1 -0.330 0.795 1 1 14 269 147 138 115 565 169 309 577 0
1185136_1 -2.039 0.243 1 1 15 176 88 140 65 541 1294 311 560 -50
1185924_1 -1.093 0.469 1 1 16 196 81 142 68 492 288 313 212 -50
1186700_1 -0.029 0.980 1 1 17 316 161 135 66 582 566 295 199 0
1187488_1 -1.640 0.321 1 1 18 236 122 133 69 795 1685 296 87 0
1188564_1 1.990 3.972 1 1 19 153 84 130 69 304 82 295 100 -50
1189340_1 0.345 1.270 1 1 20 556 245 131 66 816 1183 296 321 0

Total number of rows: 21794

Table truncated, full table size 1351 Kbytes.




Supplementary data files not provided

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