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Sample GSM33759

Query DataSets for GSM33759

Status

Public on Oct 28, 2004

Title

HCC006_Cy5

Sample type

RNA

Channel 1

Source name

HCC006

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44080

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC006
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.014	1.010	1	1	1	500	313	216	178	769	280	338	280	0
1174364_1	0.434	1.351	1	1	2	4132	1110	209	183	4778	1268	328	205	0
1175152_1	0.458	1.374	1	1	3	573	321	201	197	733	266	318	183	0
1175940_1	1.625	3.083	1	1	4	1186	421	186	184	809	286	312	148	0
1176716_1	0.681	1.603	1	1	5	1275	486	203	170	1348	451	323	153	0
1177504_1	0.524	1.437	1	1	6	769	351	209	166	931	261	334	183	0
1178580_1	0.623	1.540	1	1	7	2345	880	193	173	2460	727	318	184	0
1179356_1	-0.812	0.570	1	1	8	417	296	175	171	969	263	318	153	0
1180144_1	1.179	2.264	1	1	9	952	405	175	160	846	276	320	154	0
1180932_1	-0.926	0.526	1	1	10	345	243	198	167	731	527	303	141	0
1181708_1	-0.062	0.958	1	1	11	501	277	209	188	781	254	314	154	0
1182496_1	-1.151	0.450	1	1	12	267	146	200	213	553	171	325	387	-50
1183572_1	0.735	1.665	1	1	13	797	332	205	661	855	243	310	313	0
1184348_1	0.204	1.152	1	1	14	418	320	203	161	606	166	320	216	0
1185136_1	-0.315	0.804	1	1	15	278	206	192	163	476	304	312	303	-50
1185924_1	-0.110	0.927	1	1	16	417	304	186	270	694	230	312	328	0
1186700_1	0.000	1.000	1	1	17	480	287	183	142	775	243	320	203	0
1187488_1	0.626	1.543	1	1	18	471	257	177	160	633	218	341	246	0
1188564_1	-2.554	0.170	1	1	19	174	104	178	187	346	144	337	190	-50
1189340_1	0.750	1.682	1	1	20	779	365	194	150	861	251	328	135	0

Total number of rows: 21794

Table truncated, full table size 1395 Kbytes.

Supplementary data files not provided

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