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Sample GSM33761

Query DataSets for GSM33761

Status

Public on Oct 28, 2004

Title

HCC007_Cy5

Sample type

RNA

Channel 1

Source name

HCC007

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44082

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC007
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-1.694	0.309	1	1	1	271	179	179	143	705	228	289	136	0
1174364_1	0.127	1.092	1	1	2	1699	516	192	161	2216	587	288	100	0
1175152_1	-0.972	0.510	1	1	3	292	123	188	108	577	144	292	159	0
1175940_1	0.378	1.299	1	1	4	437	185	185	109	576	158	305	240	0
1176716_1	0.413	1.332	1	1	5	602	186	195	135	742	310	315	221	0
1177504_1	-0.222	0.857	1	1	6	439	138	201	151	696	201	308	198	0
1178580_1	0.582	1.497	1	1	7	1214	333	207	135	1247	365	307	133	0
1179356_1	-0.924	0.527	1	1	8	358	116	203	152	735	149	324	205	0
1180144_1	-0.257	0.837	1	1	9	405	140	193	171	666	294	312	121	0
1180932_1	-1.073	0.475	1	1	10	297	120	196	145	610	114	313	121	0
1181708_1	-0.785	0.581	1	1	11	348	169	203	174	649	180	300	223	0
1182496_1	-2.230	0.213	1	1	12	228	76	192	181	535	127	299	207	0
1183572_1	-0.295	0.815	1	1	13	423	125	188	103	705	189	302	190	0
1184348_1	-1.218	0.430	1	1	14	298	216	202	125	614	111	302	192	0
1185136_1	-6.424	0.012	1	1	15	196	89	198	185	418	202	298	170	-50
1185924_1	-0.749	0.595	1	1	16	330	185	192	171	617	288	293	133	0
1186700_1	-1.254	0.419	1	1	17	278	122	194	165	569	91	289	184	0
1187488_1	-1.728	0.302	1	1	18	257	89	195	147	583	142	296	178	0
1188564_1	-4.272	0.052	1	1	19	184	76	192	133	332	128	305	103	-50
1189340_1	-0.918	0.529	1	1	20	334	108	187	106	692	141	304	82	0

Total number of rows: 21794

Table truncated, full table size 1370 Kbytes.

Supplementary data files not provided

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