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Sample GSM33766

Query DataSets for GSM33766

Status

Public on Oct 28, 2004

Title

HCC010_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC010

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39294

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC010
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.009	0.994	1	1	1	786	251	116	41	1130	308	287	72	0
1174364_1	0.472	1.387	1	1	2	2948	435	112	53	2831	472	274	51	0
1175152_1	-0.271	0.829	1	1	3	527	168	113	48	904	155	279	50	0
1175940_1	-0.166	0.891	1	1	4	678	183	113	34	1070	215	277	47	0
1176716_1	0.180	1.133	1	1	5	837	229	115	37	1076	238	279	45	0
1177504_1	0.267	1.203	1	1	6	865	226	110	40	1067	191	282	46	0
1178580_1	0.631	1.548	1	1	7	1228	323	114	42	1175	304	275	47	0
1179356_1	-0.564	0.676	1	1	8	438	244	113	43	867	187	266	50	0
1180144_1	0.593	1.508	1	1	9	764	255	114	39	792	183	253	46	0
1180932_1	-0.896	0.537	1	1	10	284	135	116	41	641	157	250	48	0
1181708_1	-0.222	0.857	1	1	11	360	135	118	49	606	119	253	50	0
1182496_1	-0.879	0.544	1	1	12	249	96	119	45	555	150	256	48	0
1183572_1	0.668	1.589	1	1	13	554	353	122	58	601	266	261	47	0
1184348_1	-0.989	0.504	1	1	14	253	93	116	45	599	95	259	47	0
1185136_1	-0.054	0.963	1	1	15	173	102	116	43	327	160	253	47	-50
1185924_1	-0.573	0.672	1	1	16	257	102	120	51	511	110	256	46	0
1186700_1	-0.737	0.600	1	1	17	280	132	116	42	586	156	244	45	0
1187488_1	-0.558	0.679	1	1	18	274	164	116	50	534	169	243	49	0
1188564_1	0.155	1.113	1	1	19	3497	2201	120	518	4049	2733	255	583	0
1189340_1	0.372	1.295	1	1	20	560	228	116	318	671	174	242	360	0

Total number of rows: 21794

Table truncated, full table size 1334 Kbytes.

Supplementary data files not provided

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