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Sample GSM33768

Query DataSets for GSM33768

Status

Public on Oct 28, 2004

Title

HCC011_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC011

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39299

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC011
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.670	1.591	1	1	1	3545	805	172	131	2918	580	372	84	0
1174364_1	1.325	2.506	1	1	2	9899	1765	164	126	5014	1089	350	91	0
1175152_1	0.595	1.510	1	1	3	2690	711	163	107	2346	748	337	142	0
1175940_1	0.480	1.395	1	1	4	2953	611	171	73	2746	410	351	80	0
1176716_1	0.456	1.372	1	1	5	3229	1025	169	88	3034	809	356	81	0
1177504_1	0.875	1.834	1	1	6	3118	410	168	77	2295	338	364	92	0
1178580_1	0.611	1.528	1	1	7	3991	572	180	81	3364	447	369	92	0
1179356_1	0.471	1.386	1	1	8	1557	634	172	79	1570	531	370	81	0
1180144_1	0.509	1.423	1	1	9	2166	503	173	81	2055	404	373	79	0
1180932_1	0.252	1.191	1	1	10	1018	364	169	81	1226	302	370	79	0
1181708_1	0.340	1.266	1	1	11	1234	370	181	85	1370	333	371	84	0
1182496_1	0.299	1.230	1	1	12	971	377	181	104	1145	336	374	86	0
1183572_1	-0.296	0.815	1	1	13	565	250	181	74	944	370	378	85	0
1184348_1	0.237	1.178	1	1	14	608	359	188	80	815	237	387	85	0
1185136_1	-0.407	0.754	1	1	15	364	160	195	97	644	193	375	88	0
1185924_1	0.295	1.227	1	1	16	959	281	176	81	1149	276	383	63	0
1186700_1	0.355	1.279	1	1	17	841	366	174	83	1006	303	380	69	0
1187488_1	-0.001	0.999	1	1	18	581	277	179	99	851	170	368	72	0
1188564_1	1.255	2.386	1	1	19	2757	2049	173	65	1670	977	370	64	0
1189340_1	-0.075	0.949	1	1	20	1086	300	184	79	1513	328	372	95	0

Total number of rows: 21794

Table truncated, full table size 1361 Kbytes.

Supplementary data files not provided

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