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Sample GSM33774

Query DataSets for GSM33774

Status

Public on Oct 28, 2004

Title

HCC014_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC014

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44085

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC014
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.482	0.716	1	1	1	459	267	227	221	584	294	212	360	0
1174364_1	1.603	3.038	1	1	2	7630	2246	210	167	3003	935	198	149	0
1175152_1	0.321	1.249	1	1	3	581	387	233	162	530	180	210	108	0
1175940_1	-0.531	0.692	1	1	4	1234	506	227	155	1884	412	213	102	0
1176716_1	0.756	1.688	1	1	5	1301	487	210	165	956	274	214	107	0
1177504_1	0.460	1.376	1	1	6	1474	494	221	180	1252	322	206	93	0
1178580_1	0.595	1.510	1	1	7	3300	963	219	205	2560	618	217	95	0
1179356_1	0.718	1.645	1	1	8	636	302	209	181	515	159	217	95	0
1180144_1	0.693	1.616	1	1	9	738	341	206	207	583	241	205	107	0
1180932_1	-0.881	0.543	1	1	10	350	172	219	225	485	166	208	180	0
1181708_1	-0.478	0.718	1	1	11	509	284	207	169	681	243	198	151	0
1182496_1	-0.124	0.917	1	1	12	362	197	215	188	421	119	237	151	0
1183572_1	-0.159	0.896	1	1	13	1462	575	190	157	1843	474	212	148	0
1184348_1	-0.196	0.873	1	1	14	397	257	197	153	470	164	207	144	0
1185136_1	-1.006	0.498	1	1	15	262	190	200	163	347	285	204	187	-50
1185924_1	0.032	1.022	1	1	16	472	310	204	189	495	183	194	96	0
1186700_1	0.616	1.532	1	1	17	611	361	184	217	521	192	201	309	0
1187488_1	0.222	1.166	1	1	18	514	355	191	172	512	166	194	114	0
1188564_1	-0.649	0.638	1	1	19	230	218	205	169	257	195	212	164	-50
1189340_1	0.724	1.652	1	1	20	997	523	200	209	765	271	211	312	0

Total number of rows: 21794

Table truncated, full table size 1393 Kbytes.

Supplementary data files not provided

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