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Sample GSM33781

Query DataSets for GSM33781

Status

Public on Oct 28, 2004

Title

HCC017_Cy5

Sample type

RNA

Channel 1

Source name

HCC017

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 36523

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC017
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.071	0.952	1	1	1	498	149	202	76	742	123	391	51	0
1174364_1	0.040	1.028	1	1	2	2665	1002	205	97	3109	1143	407	68	0
1175152_1	-0.028	0.981	1	1	3	384	132	192	57	616	118	395	64	0
1175940_1	0.914	1.885	1	1	4	916	286	200	57	819	162	390	51	0
1176716_1	0.765	1.700	1	1	5	801	228	199	60	793	98	393	53	0
1177504_1	0.265	1.202	1	1	6	882	232	202	53	1037	200	398	53	0
1178580_1	0.484	1.399	1	1	7	1985	479	206	52	1840	360	404	60	0
1179356_1	-0.497	0.708	1	1	8	384	106	214	59	681	140	410	51	0
1180144_1	0.198	1.147	1	1	9	674	247	215	62	849	181	397	87	0
1180932_1	-1.020	0.493	1	1	10	297	79	211	56	592	90	395	49	0
1181708_1	-0.741	0.598	1	1	11	323	86	208	56	613	118	396	52	0
1182496_1	-1.589	0.332	1	1	12	262	67	204	76	607	95	410	57	0
1183572_1	-0.108	0.928	1	1	13	606	179	200	54	901	128	407	51	0
1184348_1	-0.533	0.691	1	1	14	340	103	195	53	644	89	407	48	0
1185136_1	0.529	1.443	1	1	15	254	125	208	50	448	129	412	50	-50
1185924_1	-0.635	0.644	1	1	16	352	105	206	52	667	131	411	49	0
1186700_1	-0.086	0.942	1	1	17	506	121	204	50	777	123	415	54	0
1187488_1	-0.272	0.828	1	1	18	392	103	205	1886	671	80	416	326	0
1188564_1	0.016	1.011	1	1	19	1967	388	204	1909	2391	285	422	330	0
1189340_1	1.642	3.121	1	1	20	1332	324	207	58	821	132	414	48	0

Total number of rows: 21775

Table truncated, full table size 1328 Kbytes.

Supplementary data files not provided

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