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Sample GSM33786 Query DataSets for GSM33786
Status Public on Oct 28, 2004
Title HCC020_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC020
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 39315

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC020
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 0.356 1.280 1 1 1 7443 1585 189 67 6518 1417 297 87 0
1174364_1 0.594 1.509 1 1 2 9369 1632 181 63 6983 1143 302 80 0
1175152_1 0.411 1.330 1 1 3 4145 1363 187 271 3571 1351 304 172 0
1175940_1 0.568 1.482 1 1 4 4229 1070 187 155 3288 1003 295 68 0
1176716_1 0.166 1.122 1 1 5 3724 992 187 94 3758 1355 298 87 0
1177504_1 0.641 1.560 1 1 6 1888 448 187 70 1502 481 305 72 0
1178580_1 0.180 1.133 1 1 7 3872 797 195 77 3861 799 298 82 0
1179356_1 0.510 1.424 1 1 8 3305 1257 191 62 2697 1076 297 79 0
1180144_1 0.387 1.308 1 1 9 4821 1236 193 88 4179 1200 295 232 0
1180932_1 0.462 1.377 1 1 10 2425 934 191 67 2075 637 295 218 0
1181708_1 0.332 1.258 1 1 11 3344 891 185 71 3049 743 294 62 0
1182496_1 0.288 1.221 1 1 12 3529 923 199 74 3288 796 295 63 0
1183572_1 0.081 1.058 1 1 13 1379 953 199 125 1519 910 295 120 0
1184348_1 0.573 1.488 1 1 14 4524 1065 189 123 3492 995 295 70 0
1185136_1 0.434 1.351 1 1 15 507 888 193 107 555 683 300 110 -50
1185924_1 0.398 1.318 1 1 16 3554 760 191 68 3095 1143 295 56 0
1186700_1 0.475 1.390 1 1 17 3976 924 187 58 3282 913 290 57 0
1187488_1 0.351 1.276 1 1 18 3627 983 184 64 3244 1180 282 80 0
1188564_1 0.920 1.892 1 1 19 4250 2845 189 71 2634 1910 279 90 0
1189340_1 0.376 1.298 1 1 20 4135 964 185 75 3623 955 283 98 0

Total number of rows: 21794

Table truncated, full table size 1348 Kbytes.




Supplementary data files not provided

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