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Sample GSM33787

Query DataSets for GSM33787

Status

Public on Oct 28, 2004

Title

HCC020_Cy5

Sample type

RNA

Channel 1

Source name

HCC020

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39314

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC020
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.316	1.245	1	1	1	6234	1432	143	53	5343	1241	277	48	0
1174364_1	0.238	1.180	1	1	2	9210	1499	150	87	8224	1108	269	57	0
1175152_1	0.584	1.499	1	1	3	2532	631	142	81	1927	544	276	55	0
1175940_1	0.587	1.502	1	1	4	4937	1180	141	59	3595	790	288	63	0
1176716_1	0.790	1.729	1	1	5	4411	796	143	63	2847	534	290	65	0
1177504_1	0.205	1.153	1	1	6	1616	500	146	74	1622	422	301	71	0
1178580_1	0.570	1.484	1	1	7	4452	635	147	57	3293	665	289	78	0
1179356_1	0.359	1.283	1	1	8	3192	757	146	68	2737	644	278	75	0
1180144_1	0.738	1.668	1	1	9	3145	841	150	81	2133	783	273	88	0
1180932_1	0.484	1.398	1	1	10	1088	618	151	103	968	312	274	143	0
1181708_1	0.477	1.391	1	1	11	1889	623	156	71	1590	594	300	86	0
1182496_1	0.256	1.194	1	1	12	1254	411	159	86	1251	442	301	115	0
1183572_1	0.829	1.776	1	1	13	965	660	147	89	750	308	273	117	0
1184348_1	0.280	1.214	1	1	14	916	460	141	64	933	355	272	57	0
1185136_1	0.006	1.004	1	1	15	268	208	142	56	401	290	271	56	-50
1185924_1	0.329	1.256	1	1	16	882	306	141	72	887	370	276	56	0
1186700_1	0.164	1.120	1	1	17	1424	817	139	75	1461	739	273	53	0
1187488_1	0.320	1.248	1	1	18	679	299	139	60	724	249	276	68	0
1188564_1	-0.400	0.758	1	1	19	1860	1136	145	384	2617	1666	274	560	0
1189340_1	0.242	1.183	1	1	20	2224	508	141	65	2091	453	267	66	0

Total number of rows: 21794

Table truncated, full table size 1342 Kbytes.

Supplementary data files not provided

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