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Sample GSM33788

Query DataSets for GSM33788

Status

Public on Oct 28, 2004

Title

HCC021_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC021

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 37437

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC021
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.035	0.976	1	1	1	1050	596	166	92	1259	693	142	36	0
1174364_1	1.348	2.546	1	1	2	5034	1286	159	66	2504	785	142	29	0
1175152_1	-0.046	0.969	1	1	3	511	158	156	55	596	132	144	26	0
1175940_1	-0.212	0.863	1	1	4	792	179	170	68	1031	165	142	26	0
1176716_1	-0.267	0.831	1	1	5	1086	292	167	74	1509	270	145	29	0
1177504_1	0.333	1.260	1	1	6	1169	257	163	64	1129	184	144	28	0
1178580_1	0.313	1.242	1	1	7	2074	572	161	69	2039	409	139	26	0
1179356_1	0.140	1.102	1	1	8	364	180	163	73	361	62	136	33	0
1180144_1	0.468	1.383	1	1	9	718	224	162	65	630	133	134	26	0
1180932_1	0.034	1.024	1	1	10	345	163	169	63	350	67	138	27	0
1181708_1	-0.399	0.759	1	1	11	439	170	166	64	585	129	141	25	0
1182496_1	-0.152	0.900	1	1	12	276	106	160	59	297	51	138	26	0
1183572_1	1.502	2.832	1	1	13	865	243	158	59	446	91	138	29	0
1184348_1	-0.406	0.754	1	1	14	314	121	166	59	378	74	136	28	0
1185136_1	1.040	2.056	1	1	15	206	112	161	63	166	63	139	26	-50
1185924_1	0.655	1.574	1	1	16	453	162	171	69	365	71	144	31	0
1186700_1	0.332	1.258	1	1	17	780	228	170	70	744	133	146	29	0
1187488_1	-1.042	0.486	1	1	18	284	118	173	70	431	118	149	34	0
1188564_1	0.309	1.239	1	1	19	3716	1177	173	72	3674	744	147	40	0
1189340_1	-0.556	0.680	1	1	20	661	211	167	74	1039	185	143	48	0

Total number of rows: 21775

Table truncated, full table size 1334 Kbytes.

Supplementary data files not provided

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