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Sample GSM33790

Query DataSets for GSM33790

Status

Public on Oct 28, 2004

Title

HCC022_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC022

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44288

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC022
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.910	0.532	1	1	1	1054	413	366	309	3337	632	888	367	0
1174364_1	1.704	3.258	1	1	2	5713	2565	369	221	3998	1229	891	319	0
1175152_1	-1.001	0.500	1	1	3	725	368	368	222	2218	553	865	326	0
1175940_1	-0.363	0.778	1	1	4	875	428	340	182	2106	577	803	328	0
1176716_1	-0.447	0.733	1	1	5	1115	523	341	206	2809	674	810	316	0
1177504_1	0.020	1.014	1	1	6	1012	415	330	195	2080	486	806	298	0
1178580_1	0.475	1.390	1	1	7	1642	525	338	192	2583	699	806	298	0
1179356_1	-1.716	0.304	1	1	8	575	289	328	209	2340	560	803	308	0
1180144_1	-0.591	0.664	1	1	9	729	311	342	215	1935	682	831	390	0
1180932_1	-0.994	0.502	1	1	10	671	375	366	221	2005	595	854	415	0
1181708_1	-1.262	0.417	1	1	11	608	277	356	217	1973	392	828	340	0
1182496_1	-2.362	0.195	1	1	12	425	226	319	210	1853	515	821	293	0
1183572_1	-0.614	0.654	1	1	13	1095	461	326	345	3013	856	784	557	0
1184348_1	-1.616	0.326	1	1	14	525	235	311	204	1995	401	752	285	0
1185136_1	-2.017	0.247	1	1	15	468	300	304	182	1964	355	707	428	0
1185924_1	-1.343	0.394	1	1	16	477	238	327	205	1452	328	731	564	0
1186700_1	-0.928	0.526	1	1	17	530	268	341	212	1486	437	805	366	0
1187488_1	-1.044	0.485	1	1	18	513	227	352	221	1432	386	803	311	0
1188564_1	-1.911	0.266	1	1	19	360	196	344	200	914	389	800	313	-50
1189340_1	-0.280	0.824	1	1	20	651	343	351	198	1542	459	852	362	0

Total number of rows: 21794

Table truncated, full table size 1428 Kbytes.

Supplementary data files not provided

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