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Sample GSM33791

Query DataSets for GSM33791

Status

Public on Oct 28, 2004

Title

HCC022_Cy5

Sample type

RNA

Channel 1

Source name

HCC022

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44287

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC022
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.638	0.643	1	1	1	861	227	586	174	693	169	159	70	0
1174364_1	-1.421	0.373	1	1	2	1209	313	578	167	2265	334	157	69	0
1175152_1	-0.724	0.605	1	1	3	685	209	570	172	395	77	158	58	-50
1175940_1	-0.143	0.906	1	1	4	865	280	592	187	539	94	163	69	0
1176716_1	-0.599	0.660	1	1	5	785	221	577	212	547	85	154	54	0
1177504_1	-0.545	0.685	1	1	6	809	226	558	157	617	99	160	54	0
1178580_1	-0.648	0.638	1	1	7	959	267	583	159	898	176	163	58	0
1179356_1	-0.536	0.690	1	1	8	699	242	568	166	391	63	154	44	-50
1180144_1	-0.154	0.899	1	1	9	764	200	568	188	423	89	151	51	0
1180932_1	-0.878	0.544	1	1	10	647	189	565	173	343	50	155	46	-50
1181708_1	-0.755	0.593	1	1	11	675	157	561	163	397	73	157	36	-50
1182496_1	-0.266	0.832	1	1	12	665	192	567	166	302	47	155	55	-50
1183572_1	0.897	1.862	1	1	13	1070	318	597	168	466	71	149	42	0
1184348_1	-0.796	0.576	1	1	14	649	178	577	178	306	75	150	47	-50
1185136_1	0.267	1.203	1	1	15	617	188	563	164	210	106	154	37	-50
1185924_1	-0.302	0.811	1	1	16	660	181	567	194	298	53	155	39	-50
1186700_1	-0.900	0.536	1	1	17	618	166	551	161	307	57	151	40	-50
1187488_1	0.046	1.033	1	1	18	650	150	554	160	264	55	148	36	-50
1188564_1	-2.003	0.250	1	1	19	545	149	567	167	155	35	150	42	-50
1189340_1	-0.746	0.596	1	1	20	704	174	574	167	427	75	155	90	0

Total number of rows: 21794

Table truncated, full table size 1378 Kbytes.

Supplementary data files not provided

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