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Sample GSM33797

Query DataSets for GSM33797

Status

Public on Oct 28, 2004

Title

HCC025_Cy5

Sample type

RNA

Channel 1

Source name

HCC025

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 37442

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC025
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.475	1.390	1	1	1	776	269	157	45	802	257	226	39	0
1174364_1	0.518	1.432	1	1	2	5428	1114	157	44	4985	1157	225	40	0
1175152_1	-0.385	0.766	1	1	3	362	77	147	41	583	114	220	41	0
1175940_1	0.092	1.066	1	1	4	715	144	148	43	906	129	218	40	0
1176716_1	0.490	1.404	1	1	5	1174	249	150	40	1166	205	223	37	0
1177504_1	0.000	1.000	1	1	6	812	154	150	46	1082	151	226	40	0
1178580_1	0.784	1.721	1	1	7	2264	272	145	44	1813	286	221	41	0
1179356_1	-0.979	0.507	1	1	8	287	65	143	39	586	78	219	37	0
1180144_1	0.156	1.114	1	1	9	622	159	144	48	777	195	222	461	0
1180932_1	-0.678	0.625	1	1	10	274	69	144	41	491	66	222	506	0
1181708_1	-0.866	0.549	1	1	11	250	78	141	38	482	114	225	38	0
1182496_1	-1.063	0.479	1	1	12	235	71	141	41	481	50	227	33	0
1183572_1	-0.239	0.847	1	1	13	566	115	144	39	871	122	227	35	0
1184348_1	-0.831	0.562	1	1	14	267	56	144	44	504	58	221	33	0
1185136_1	-0.822	0.566	1	1	15	150	40	143	48	244	82	228	37	-50
1185924_1	-0.468	0.723	1	1	16	340	82	146	41	572	120	225	36	0
1186700_1	1.002	2.003	1	1	17	808	201	145	42	656	156	228	36	0
1187488_1	-0.746	0.596	1	1	18	248	56	147	37	452	55	233	37	0
1188564_1	-0.029	0.980	1	1	19	2032	260	145	39	2720	326	230	40	0
1189340_1	-0.838	0.560	1	1	20	307	95	140	38	609	141	223	36	0

Total number of rows: 21775

Table truncated, full table size 1332 Kbytes.

Supplementary data files not provided

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