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Sample GSM33798

Query DataSets for GSM33798

Status

Public on Oct 28, 2004

Title

HCC026_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC026

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 37431

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC026
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.113	0.925	1	1	1	498	145	180	98	599	88	187	48	0
1174364_1	1.835	3.567	1	1	2	8063	1072	186	82	2838	491	192	53	0
1175152_1	0.168	1.123	1	1	3	390	136	165	72	415	80	175	46	0
1175940_1	0.124	1.090	1	1	4	1055	248	147	55	1170	188	172	31	0
1176716_1	0.223	1.168	1	1	5	1142	268	149	54	1196	208	177	34	0
1177504_1	-0.112	0.925	1	1	6	1095	225	146	55	1406	224	177	30	0
1178580_1	0.393	1.313	1	1	7	2746	405	140	53	2549	401	171	28	0
1179356_1	-0.271	0.829	1	1	8	306	96	140	45	409	74	169	37	0
1180144_1	0.205	1.152	1	1	9	770	312	141	45	822	210	168	33	0
1180932_1	-1.107	0.464	1	1	10	218	59	137	41	376	40	167	27	0
1181708_1	-0.240	0.847	1	1	11	342	134	142	44	452	100	169	32	0
1182496_1	-1.497	0.354	1	1	12	202	71	139	49	380	48	167	29	0
1183572_1	0.384	1.305	1	1	13	869	199	146	50	844	123	180	36	0
1184348_1	-1.022	0.492	1	1	14	252	58	148	44	438	63	185	32	0
1185136_1	0.026	1.018	1	1	15	171	91	137	43	214	133	174	27	-50
1185924_1	0.614	1.531	1	1	16	434	140	135	44	403	57	169	40	0
1186700_1	0.340	1.265	1	1	17	586	165	135	35	598	116	171	27	0
1187488_1	-0.509	0.703	1	1	18	303	113	137	39	454	97	171	31	0
1188564_1	0.117	1.085	1	1	19	6656	834	138	42	7371	1097	171	32	0
1189340_1	-0.033	0.978	1	1	20	800	189	135	40	979	175	164	24	0

Total number of rows: 21775

Table truncated, full table size 1322 Kbytes.

Supplementary data files not provided

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