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Sample GSM33799 Query DataSets for GSM33799
Status Public on Oct 28, 2004
Title HCC026_Cy5
Sample type RNA
 
Channel 1
Source name HCC026
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 37430

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC026
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.282 0.822 1 1 1 364 117 96 33 602 120 204 29 0
1174364_1 -1.166 0.446 1 1 2 1236 298 97 34 3335 647 213 31 0
1175152_1 -1.352 0.392 1 1 3 208 63 98 27 559 88 216 37 0
1175940_1 -0.148 0.903 1 1 4 415 147 98 31 638 167 209 61 0
1176716_1 -0.069 0.954 1 1 5 606 132 97 24 862 117 210 40 0
1177504_1 0.655 1.574 1 1 6 1104 209 96 123 990 122 208 52 0
1178580_1 0.159 1.117 1 1 7 1150 269 94 124 1358 273 203 52 0
1179356_1 -1.586 0.333 1 1 8 157 49 94 29 428 46 197 28 0
1180144_1 -0.477 0.719 1 1 9 416 127 93 25 743 147 194 32 0
1180932_1 -1.860 0.275 1 1 10 140 40 94 25 400 59 196 25 0
1181708_1 -0.632 0.645 1 1 11 262 98 93 95 517 114 197 67 0
1182496_1 -1.796 0.288 1 1 12 148 39 94 100 427 39 198 71 0
1183572_1 0.091 1.065 1 1 13 648 150 96 55 833 130 200 36 0
1184348_1 -0.519 0.698 1 1 14 286 81 98 32 540 75 211 46 0
1185136_1 -0.328 0.797 1 1 15 114 47 99 30 235 93 212 58 -50
1185924_1 -1.337 0.396 1 1 16 202 55 98 30 532 64 211 36 0
1186700_1 -0.158 0.896 1 1 17 449 137 96 51 685 145 204 29 0
1187488_1 -0.501 0.706 1 1 18 206 83 99 52 382 70 197 26 0
1188564_1 0.890 1.853 1 1 19 5473 1099 97 27 3741 658 198 24 0
1189340_1 0.137 1.100 1 1 20 492 138 94 23 636 104 194 35 0

Total number of rows: 21775

Table truncated, full table size 1316 Kbytes.




Supplementary data files not provided

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