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Sample GSM33801

Query DataSets for GSM33801

Status

Public on Oct 28, 2004

Title

HCC027_Cy5

Sample type

RNA

Channel 1

Source name

HCC027

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 36452

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC027
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.262	0.834	1	1	1	659	158	174	92	963	146	304	73	0
1174364_1	-0.136	0.910	1	1	2	1931	566	177	65	2486	533	302	44	0
1175152_1	-0.446	0.734	1	1	3	340	112	180	81	550	111	303	45	0
1175940_1	0.630	1.548	1	1	4	706	218	172	81	692	170	301	65	0
1176716_1	0.516	1.430	1	1	5	1106	315	176	67	1038	189	301	45	0
1177504_1	0.510	1.424	1	1	6	1018	360	180	191	966	230	299	173	0
1178580_1	0.041	1.029	1	1	7	1651	574	177	96	1927	509	303	169	0
1179356_1	-0.559	0.679	1	1	8	276	81	170	55	477	88	300	40	0
1180144_1	0.394	1.314	1	1	9	676	228	167	54	734	138	295	42	0
1180932_1	-0.521	0.697	1	1	10	246	76	163	56	434	78	299	45	0
1181708_1	-0.503	0.706	1	1	11	242	90	171	52	417	81	303	44	0
1182496_1	-1.296	0.407	1	1	12	229	58	174	72	452	79	299	44	0
1183572_1	0.163	1.120	1	1	13	492	156	164	54	620	127	288	44	0
1184348_1	0.001	1.000	1	1	14	281	112	168	56	420	69	292	46	0
1185136_1	0.502	1.417	1	1	15	185	49	170	57	303	79	291	40	-50
1185924_1	-0.169	0.890	1	1	16	312	93	166	53	483	61	297	37	0
1186700_1	0.400	1.319	1	1	17	575	194	171	136	635	100	288	83	0
1187488_1	-0.429	0.743	1	1	18	345	125	168	158	564	107	294	84	0
1188564_1	-0.466	0.724	1	1	19	1312	291	175	82	2081	368	301	42	0
1189340_1	0.263	1.200	1	1	20	498	193	173	74	605	119	298	37	0

Total number of rows: 21775

Table truncated, full table size 1333 Kbytes.

Supplementary data files not provided

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