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Sample GSM33803

Query DataSets for GSM33803

Status

Public on Oct 28, 2004

Title

HCC028_Cy5

Sample type

RNA

Channel 1

Source name

HCC028

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 36384

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC028
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.495	0.709	1	1	1	230	90	112	65	332	102	171	49	0
1174364_1	-0.177	0.885	1	1	2	1726	424	110	78	1937	494	169	73	0
1175152_1	-0.945	0.519	1	1	3	209	101	114	76	342	99	165	68	0
1175940_1	0.189	1.140	1	1	4	386	147	114	58	402	114	171	44	0
1176716_1	0.246	1.186	1	1	5	471	173	118	59	462	102	174	51	0
1177504_1	-0.383	0.767	1	1	6	277	101	113	60	384	90	177	41	0
1178580_1	-0.171	0.888	1	1	7	697	267	118	57	816	228	185	47	0
1179356_1	-0.399	0.759	1	1	8	175	71	117	78	254	50	180	62	0
1180144_1	-0.426	0.744	1	1	9	259	136	116	69	363	114	177	56	0
1180932_1	-1.818	0.284	1	1	10	138	71	121	59	237	49	179	52	-50
1181708_1	-1.199	0.436	1	1	11	166	62	121	65	286	89	186	58	0
1182496_1	-1.199	0.436	1	1	12	141	66	114	56	240	61	180	45	-50
1183572_1	0.234	1.176	1	1	13	289	159	114	54	321	76	177	47	0
1184348_1	-1.020	0.493	1	1	14	158	102	131	57	258	66	205	54	0
1185136_1	1.216	2.323	1	1	15	136	76	112	55	188	59	178	44	-50
1185924_1	-1.121	0.460	1	1	16	152	70	114	52	259	55	179	46	0
1186700_1	-0.672	0.628	1	1	17	186	74	114	61	288	70	177	44	0
1187488_1	-0.705	0.613	1	1	18	173	58	128	62	267	56	196	58	0
1188564_1	-0.982	0.506	1	1	19	569	194	118	53	1034	254	172	49	0
1189340_1	-0.969	0.511	1	1	20	231	96	117	54	393	81	177	46	0

Total number of rows: 21775

Table truncated, full table size 1330 Kbytes.

Supplementary data files not provided

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