GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM33808

Query DataSets for GSM33808

Status

Public on Oct 28, 2004

Title

HCC031_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC031

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45213

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC031
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.097	1.069	1	1	1	667	198	154	69	811	193	274	86	0
1174364_1	0.803	1.744	1	1	2	3033	1132	150	71	2126	747	276	89	0
1175152_1	-0.723	0.606	1	1	3	362	132	146	68	697	153	298	89	0
1175940_1	-0.872	0.546	1	1	4	413	139	147	71	850	208	305	113	0
1176716_1	-0.459	0.727	1	1	5	1041	317	141	66	1667	382	282	107	0
1177504_1	0.041	1.029	1	1	6	641	181	142	57	806	198	263	80	0
1178580_1	1.273	2.417	1	1	7	6430	1121	144	68	3189	655	278	133	0
1179356_1	-0.742	0.598	1	1	8	297	100	141	70	570	142	278	85	0
1180144_1	-0.152	0.900	1	1	9	397	154	130	60	608	161	276	84	0
1180932_1	-0.606	0.657	1	1	10	278	96	133	66	531	134	284	154	0
1181708_1	-1.269	0.415	1	1	11	247	83	141	68	574	153	288	96	0
1182496_1	-1.951	0.259	1	1	12	191	72	139	67	504	108	279	86	0
1183572_1	-0.040	0.973	1	1	13	570	193	139	68	774	172	278	82	0
1184348_1	-1.262	0.417	1	1	14	212	82	139	66	467	135	271	85	0
1185136_1	-1.990	0.252	1	1	15	224	64	139	57	649	133	271	70	0
1185924_1	-0.957	0.515	1	1	16	238	88	151	74	481	122	292	81	0
1186700_1	0.087	1.062	1	1	17	396	144	154	71	537	162	282	86	0
1187488_1	-1.017	0.494	1	1	18	247	94	149	69	501	108	279	104	0
1188564_1	0.163	1.119	1	1	19	143	56	149	68	273	76	278	96	-50
1189340_1	0.333	1.260	1	1	20	353	126	147	62	463	111	280	99	0

Total number of rows: 21794

Table truncated, full table size 1355 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |