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Sample GSM33812 Query DataSets for GSM33812
Status Public on Oct 28, 2004
Title HCC033_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC033
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 45216

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC033
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 0.297 1.229 1 1 1 2612 633 213 331 2699 554 322 167 0
1174364_1 0.057 1.040 1 1 2 8466 1115 211 128 9979 1371 318 169 0
1175152_1 0.205 1.153 1 1 3 738 916 202 126 878 234 312 163 0
1175940_1 0.116 1.083 1 1 4 1005 655 204 3506 1209 236 309 2475 0
1176716_1 1.252 2.381 1 1 5 3351 6788 229 3073 1915 1763 319 2156 0
1177504_1 0.353 1.277 1 1 6 1121 278 220 844 1179 235 320 271 0
1178580_1 0.844 1.795 1 1 7 22397 4149 216 1146 15361 2168 320 181 0
1179356_1 0.482 1.396 1 1 8 1004 1016 208 620 1009 260 315 222 0
1180144_1 -0.127 0.916 1 1 9 876 448 205 796 1199 403 307 214 0
1180932_1 -0.024 0.983 1 1 10 526 206 194 546 722 213 311 175 0
1181708_1 -0.828 0.563 1 1 11 342 146 193 540 633 176 311 158 0
1182496_1 -1.733 0.301 1 1 12 269 88 204 142 560 151 297 120 0
1183572_1 -0.368 0.775 1 1 13 1186 265 187 140 1868 271 298 113 0
1184348_1 -0.094 0.937 1 1 14 413 155 179 129 599 172 295 111 0
1185136_1 -0.821 0.566 1 1 15 626 293 188 100 1228 416 286 203 0
1185924_1 0.198 1.147 1 1 16 458 201 182 104 592 164 299 131 0
1186700_1 0.187 1.139 1 1 17 747 281 184 104 897 260 295 116 0
1187488_1 -0.405 0.755 1 1 18 360 133 182 95 580 143 293 95 0
1188564_1 -0.301 0.812 1 1 19 193 84 177 113 321 86 297 111 -50
1189340_1 -0.268 0.831 1 1 20 561 222 168 89 864 209 288 106 0

Total number of rows: 21794

Table truncated, full table size 1365 Kbytes.




Supplementary data files not provided

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