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Sample GSM33814 Query DataSets for GSM33814
Status Public on Oct 28, 2004
Title HCC034_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC034
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 45218

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC034
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 0.696 1.620 1 1 1 1876 487 291 167 1358 319 221 119 0
1174364_1 1.258 2.391 1 1 2 10512 2291 293 476 5195 1079 227 293 0
1175152_1 -0.077 0.948 1 1 3 842 300 271 474 914 224 214 284 0
1175940_1 0.523 1.437 1 1 4 1123 313 254 149 918 263 215 75 0
1176716_1 0.129 1.093 1 1 5 2307 543 265 146 2387 462 216 85 0
1177504_1 0.583 1.498 1 1 6 1639 429 273 163 1285 224 225 96 0
1178580_1 0.541 1.455 1 1 7 19804 3004 254 147 15849 3238 232 97 0
1179356_1 0.044 1.031 1 1 8 649 274 256 127 667 194 224 77 0
1180144_1 -0.420 0.748 1 1 9 1036 300 261 120 1429 366 224 81 0
1180932_1 -0.478 0.718 1 1 10 492 223 269 131 588 189 227 98 0
1181708_1 0.073 1.052 1 1 11 652 243 271 127 646 167 225 85 0
1182496_1 -0.390 0.763 1 1 12 352 147 245 119 393 90 230 89 0
1183572_1 0.684 1.607 1 1 13 1253 381 237 107 953 249 218 88 0
1184348_1 0.133 1.096 1 1 14 482 218 233 106 479 204 215 78 0
1185136_1 0.242 1.183 1 1 15 686 199 226 103 648 131 196 72 0
1185924_1 -0.105 0.930 1 1 16 455 194 243 122 465 128 200 76 0
1186700_1 0.397 1.317 1 1 17 720 258 243 123 622 193 201 78 0
1187488_1 -1.125 0.458 1 1 18 381 165 241 115 551 136 196 69 0
1188564_1 3.217 9.299 1 1 19 256 114 224 119 200 57 196 61 -50
1189340_1 0.156 1.114 1 1 20 586 201 238 127 565 176 202 78 0

Total number of rows: 21794

Table truncated, full table size 1371 Kbytes.




Supplementary data files not provided

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