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Sample GSM33822

Query DataSets for GSM33822

Status

Public on Oct 28, 2004

Title

HCC038_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC038

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 45226

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC038
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.664	1.585	1	1	1	1430	336	212	118	1850	410	450	192	0
1174364_1	0.599	1.515	1	1	2	12297	2390	226	603	14984	2532	467	314	0
1175152_1	-0.069	0.953	1	1	3	739	293	220	600	1461	328	469	338	0
1175940_1	-0.372	0.773	1	1	4	1378	352	210	112	3222	618	468	222	0
1176716_1	0.741	1.671	1	1	5	2586	620	204	123	3056	583	459	184	0
1177504_1	0.193	1.143	1	1	6	1553	404	206	127	2608	511	461	221	0
1178580_1	1.373	2.590	1	1	7	31880	5575	213	134	22768	5190	495	233	0
1179356_1	-0.288	0.819	1	1	8	592	211	214	125	1378	343	537	192	0
1180144_1	-0.134	0.911	1	1	9	1062	350	209	117	2194	592	489	165	0
1180932_1	-0.128	0.915	1	1	10	556	275	214	113	1140	303	459	163	0
1181708_1	-0.641	0.641	1	1	11	458	250	206	116	1224	337	508	193	0
1182496_1	-1.500	0.354	1	1	12	296	159	210	106	995	206	552	190	0
1183572_1	-0.172	0.888	1	1	13	1427	430	208	130	3060	665	559	197	0
1184348_1	-0.513	0.701	1	1	14	516	338	207	135	1382	1822	579	186	0
1185136_1	-0.566	0.676	1	1	15	435	165	188	119	1226	204	560	503	0
1185924_1	0.076	1.054	1	1	16	502	222	190	125	1072	285	533	160	0
1186700_1	0.665	1.586	1	1	17	871	395	205	111	1295	380	530	253	0
1187488_1	-0.487	0.713	1	1	18	395	209	200	117	1060	333	562	242	0
1188564_1	-0.073	0.950	1	1	19	209	108	197	117	573	190	550	207	-50
1189340_1	-0.588	0.665	1	1	20	415	207	209	104	1116	460	552	245	0

Total number of rows: 21794

Table truncated, full table size 1402 Kbytes.

Supplementary data files not provided

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