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Sample GSM33827

Query DataSets for GSM33827

Status

Public on Oct 28, 2004

Title

HCC040_Cy5

Sample type

RNA

Channel 1

Source name

HCC040

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 43401

Array Print: Hs-OperonV2-vW1.1p10-042903
Tissue_type: Hepatocellular Carcinoma
Sample: HCC040
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1174261_1	0.473	1.388	1	1	2	2710	492	273	132	2212	411	237	91	0
1175033_1	-0.068	0.954	1	1	3	2702	577	274	126	3095	519	232	86	0
1175841_1	0.442	1.358	1	1	4	1468	459	258	145	1232	342	230	86	0
1176613_1	-0.372	0.773	1	1	5	788	217	255	223	1011	247	235	100	0
1177385_1	1.222	2.332	1	1	6	4862	1491	263	233	2463	802	245	108	0
1179253_1	-0.840	0.559	1	1	8	3626	601	261	139	7019	883	243	91	0
1180025_1	-1.013	0.496	1	1	9	1204	334	252	131	2407	382	246	114	0
1180833_1	0.444	1.361	1	1	10	6677	2898	240	122	5570	2299	249	118	0
1181605_1	-0.391	0.763	1	1	11	1253	381	249	134	1722	391	241	110	0
1182377_1	-0.535	0.690	1	1	12	3410	749	270	175	5363	1012	247	221	0
1184245_1	0.703	1.628	1	1	14	2103	475	247	149	1522	371	240	109	0
1185017_1	-0.639	0.642	1	1	15	444	194	251	150	566	157	228	88	0
1185825_1	-0.667	0.630	1	1	16	717	230	249	147	1068	248	232	114	0
1186597_1	0.820	1.765	1	1	17	18624	6270	246	143	11946	4447	235	124	0
1187369_1	-0.359	0.780	1	1	18	668	274	236	125	845	195	222	97	0
1189237_1	1.133	2.194	1	1	20	2906	597	238	134	1586	278	218	92	0
1190009_1	0.767	1.702	1	1	21	1904	364	223	134	1331	250	220	93	0
1190817_1	0.084	1.060	1	1	22	1309	353	218	129	1375	272	217	86	0
1191589_1	0.181	1.134	1	1	23	983	334	227	136	978	336	228	83	0
1192361_1	-0.502	0.706	1	1	24	455	183	234	130	587	142	235	84	0

Total number of rows: 21794

Table truncated, full table size 1392 Kbytes.

Supplementary data files not provided

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