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Sample GSM33831 Query DataSets for GSM33831
Status Public on Oct 28, 2004
Title HCC042_Cy5
Sample type RNA
 
Channel 1
Source name HCC042
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 44356

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC042
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 0.221 1.166 1 1 1 1397 404 233 229 1454 324 256 102 0
1174364_1 -1.163 0.447 1 1 2 3074 864 232 156 7894 2070 257 117 0
1175152_1 0.028 1.020 1 1 3 649 221 225 145 752 192 253 102 0
1175940_1 0.449 1.365 1 1 4 1262 339 210 269 1164 258 239 89 0
1176716_1 0.968 1.956 1 1 5 2416 381 211 258 1593 268 240 94 0
1177504_1 0.088 1.063 1 1 6 1280 277 216 110 1447 229 246 79 0
1178580_1 0.302 1.233 1 1 7 3224 753 214 100 3174 625 244 84 0
1179356_1 -0.453 0.731 1 1 8 511 177 212 89 740 156 249 75 0
1180144_1 -0.818 0.567 1 1 9 519 183 206 103 913 224 251 85 0
1180932_1 -0.616 0.652 1 1 10 405 136 206 234 606 162 240 161 0
1181708_1 -0.667 0.630 1 1 11 425 140 194 100 682 158 242 79 0
1182496_1 -1.192 0.438 1 1 12 289 140 200 94 492 98 248 75 0
1183572_1 -0.353 0.783 1 1 13 850 241 187 123 1251 280 235 71 0
1184348_1 -0.442 0.736 1 1 14 408 168 186 116 594 137 232 70 0
1185136_1 -0.435 0.740 1 1 15 604 93 188 85 902 171 227 59 0
1185924_1 0.133 1.097 1 1 16 547 333 197 269 614 156 231 167 0
1186700_1 0.436 1.353 1 1 17 725 210 195 286 689 166 219 188 0
1187488_1 -0.031 0.979 1 1 18 445 235 184 87 542 133 222 91 0
1188564_1 2.935 7.650 1 1 19 237 135 186 130 235 69 227 94 -50
1189340_1 1.613 3.058 1 1 20 1995 537 188 95 935 287 226 86 0

Total number of rows: 21794

Table truncated, full table size 1357 Kbytes.




Supplementary data files not provided

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