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Sample GSM33832

Query DataSets for GSM33832

Status

Public on Oct 28, 2004

Title

HCC043_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC043

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44359

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC043
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.305	1.236	1	1	1	1073	436	263	204	1339	299	418	153	0
1174364_1	1.101	2.145	1	1	2	4464	7746	263	305	3211	4707	459	413	0
1175152_1	-1.102	0.466	1	1	3	438	208	243	260	1030	201	442	404	0
1175940_1	-1.070	0.476	1	1	4	483	214	244	151	1127	235	422	129	0
1176716_1	-0.050	0.966	1	1	5	1012	428	246	145	1548	338	434	248	0
1177504_1	0.021	1.015	1	1	6	702	245	239	164	1087	196	446	133	0
1178580_1	0.665	1.586	1	1	7	1851	818	261	176	1853	478	444	156	0
1179356_1	-1.153	0.450	1	1	8	477	229	261	1171	1119	206	444	324	0
1180144_1	-0.229	0.853	1	1	9	618	329	241	1323	1043	258	422	3346	0
1180932_1	-1.902	0.268	1	1	10	321	158	241	347	820	164	400	2988	0
1181708_1	-1.682	0.312	1	1	11	359	183	249	135	897	169	401	196	0
1182496_1	-1.588	0.333	1	1	12	355	201	257	126	843	156	429	158	0
1183572_1	-0.162	0.894	1	1	13	741	374	248	129	1207	227	432	118	0
1184348_1	-1.355	0.391	1	1	14	398	290	248	126	971	217	432	148	0
1185136_1	-0.977	0.508	1	1	15	483	203	244	140	1097	213	436	116	0
1185924_1	-0.904	0.534	1	1	16	366	189	250	289	741	173	436	223	0
1186700_1	-0.988	0.504	1	1	17	409	197	254	237	874	219	442	110	0
1187488_1	-0.997	0.501	1	1	18	388	166	255	219	836	199	463	122	0
1188564_1	5.491	44.965	1	1	19	275	155	243	139	417	101	429	120	-50
1189340_1	-0.741	0.598	1	1	20	435	193	246	165	875	175	431	125	0

Total number of rows: 21794

Table truncated, full table size 1403 Kbytes.

Supplementary data files not provided

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