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Sample GSM33833

Query DataSets for GSM33833

Status

Public on Oct 28, 2004

Title

HCC043_Cy5

Sample type

RNA

Channel 1

Source name

HCC043

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44358

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC043
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.088	0.941	1	1	1	5196	1129	441	178	5683	1508	446	158	0
1174364_1	-0.506	0.704	1	1	2	12160	3567	430	171	17726	5395	468	152	0
1175152_1	0.249	1.188	1	1	3	1794	403	418	187	1668	325	468	167	0
1175940_1	-0.091	0.939	1	1	4	1812	433	415	200	2018	411	476	157	0
1176716_1	0.775	1.711	1	1	5	6011	919	410	205	3889	741	497	162	0
1177504_1	-0.513	0.701	1	1	6	1804	382	417	197	2537	418	486	132	0
1178580_1	0.302	1.232	1	1	7	7916	2136	424	180	6777	1380	477	157	0
1179356_1	-0.230	0.853	1	1	8	1179	336	399	167	1408	406	460	156	0
1180144_1	0.357	1.281	1	1	9	2524	667	371	161	2198	573	456	174	0
1180932_1	0.038	1.027	1	1	10	1025	376	371	168	1118	289	458	123	0
1181708_1	-0.973	0.509	1	1	11	755	230	380	164	1217	228	454	151	0
1182496_1	-0.389	0.764	1	1	12	708	234	361	174	923	205	452	149	0
1183572_1	0.009	1.006	1	1	13	2374	590	335	145	2538	669	438	145	0
1184348_1	-0.132	0.913	1	1	14	798	268	325	156	949	280	412	119	0
1185136_1	-0.204	0.868	1	1	15	1035	305	283	141	1263	369	365	113	0
1185924_1	0.265	1.201	1	1	16	1072	314	322	159	1053	246	406	130	0
1186700_1	0.115	1.083	1	1	17	1049	267	332	162	1094	294	408	132	0
1187488_1	-0.209	0.865	1	1	18	645	266	307	165	794	194	389	138	0
1188564_1	-2.171	0.222	1	1	19	308	140	305	151	390	111	376	119	-50
1189340_1	0.991	1.988	1	1	20	2183	764	307	152	1372	471	394	122	0

Total number of rows: 21794

Table truncated, full table size 1410 Kbytes.

Supplementary data files not provided

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