GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM33850

Query DataSets for GSM33850

Status

Public on Oct 28, 2004

Title

HCC052_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC052

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44294

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC052
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.035	1.025	1	1	1	543	305	239	351	776	221	366	166	0
1174364_1	0.158	1.116	1	1	2	27810	3243	212	176	34539	5056	359	341	0
1175152_1	0.065	1.046	1	1	3	770	362	222	187	1077	283	353	335	0
1175940_1	0.375	1.297	1	1	4	1874	536	217	149	2117	483	352	110	0
1176716_1	-0.026	0.982	1	1	5	2143	587	209	152	3075	695	355	114	0
1177504_1	0.756	1.689	1	1	6	3222	824	210	200	2817	602	353	177	0
1178580_1	0.705	1.630	1	1	7	5557	1254	197	195	4904	1049	360	119	0
1179356_1	0.054	1.038	1	1	8	502	263	197	202	758	152	352	122	0
1180144_1	-0.400	0.758	1	1	9	1601	521	213	202	2885	698	354	128	0
1180932_1	-0.290	0.818	1	1	10	375	204	217	576	613	171	346	336	0
1181708_1	0.784	1.721	1	1	11	954	450	204	169	939	265	337	126	0
1182496_1	0.358	1.281	1	1	12	430	209	200	157	594	133	346	114	0
1183572_1	0.019	1.013	1	1	13	2194	654	192	153	3072	545	342	113	0
1184348_1	0.154	1.113	1	1	14	668	329	196	149	937	223	351	133	0
1185136_1	-0.122	0.919	1	1	15	673	185	202	159	1064	333	356	111	0
1185924_1	0.457	1.372	1	1	16	500	230	206	154	652	182	356	133	0
1186700_1	-0.429	0.743	1	1	17	809	351	206	149	1469	366	347	118	0
1187488_1	-0.351	0.784	1	1	18	575	371	209	131	988	333	343	101	0
1188564_1	2.354	5.113	1	1	19	237	158	200	136	344	89	334	109	-50
1189340_1	0.564	1.478	1	1	20	1466	559	190	157	1541	429	348	116	0

Total number of rows: 21794

Table truncated, full table size 1387 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |