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Sample GSM33853

Query DataSets for GSM33853

Status

Public on Oct 28, 2004

Title

HCC053_Cy5

Sample type

RNA

Channel 1

Source name

HCC053

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 44296

Array Print: Hs-OperonV2-vB1.1p12-060403
Tissue_type: Hepatocellular Carcinoma
Sample: HCC053
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.720	0.607	1	1	1	516	313	198	194	969	306	303	229	0
1174364_1	-0.591	0.664	1	1	2	5232	1550	190	298	9943	1945	287	227	0
1175152_1	0.105	1.075	1	1	3	654	344	187	282	846	281	294	221	0
1175940_1	0.747	1.679	1	1	4	1459	542	190	179	1269	365	308	183	0
1176716_1	0.233	1.175	1	1	5	1330	478	182	208	1539	402	297	170	0
1177504_1	-0.286	0.820	1	1	6	985	341	186	187	1544	334	306	170	0
1178580_1	0.204	1.152	1	1	7	3386	936	198	184	3824	796	307	195	0
1179356_1	-0.291	0.818	1	1	8	582	256	180	191	916	278	291	173	0
1180144_1	0.861	1.816	1	1	9	1237	499	181	159	1036	337	297	226	0
1180932_1	-0.775	0.584	1	1	10	371	224	200	176	675	195	303	223	0
1181708_1	0.111	1.080	1	1	11	661	359	180	208	854	267	288	204	0
1182496_1	-1.136	0.455	1	1	12	328	222	187	162	691	273	297	162	0
1183572_1	0.240	1.181	1	1	13	895	415	185	188	1064	278	300	240	0
1184348_1	-0.374	0.771	1	1	14	433	366	186	221	706	208	299	2024	0
1185136_1	-1.198	0.436	1	1	15	233	170	185	184	438	269	298	1933	-50
1185924_1	-0.536	0.690	1	1	16	399	290	164	226	713	189	280	229	0
1186700_1	-0.558	0.679	1	1	17	524	392	181	169	923	246	281	178	0
1187488_1	0.241	1.182	1	1	18	502	299	171	153	633	233	277	179	0
1188564_1	1.167	2.245	1	1	19	247	170	164	177	333	199	286	183	-50
1189340_1	-0.172	0.887	1	1	20	665	301	184	173	983	316	294	177	0

Total number of rows: 21794

Table truncated, full table size 1397 Kbytes.

Supplementary data files not provided

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