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Sample GSM33857 Query DataSets for GSM33857
Status Public on Oct 28, 2004
Title HCC055_Cy5
Sample type RNA
 
Channel 1
Source name HCC055
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 38933

Array Print: Hs-OperonV2-vB1.1p3-013003
Tissue_type: Hepatocellular Carcinoma
Sample: HCC055
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.290 0.818 1 1 1 684 183 78 25 928 169 204 38 0
1174364_1 0.175 1.129 1 1 2 5278 754 79 32 4694 705 196 43 0
1175152_1 0.157 1.115 1 1 3 605 151 80 35 655 146 195 69 0
1175940_1 0.159 1.116 1 1 4 750 197 77 23 789 194 200 34 0
1176716_1 0.503 1.417 1 1 5 2255 563 78 23 1698 403 197 32 0
1177504_1 -0.484 0.715 1 1 6 730 182 80 21 1083 231 195 33 0
1178580_1 0.569 1.484 1 1 7 2501 810 79 26 1797 533 202 36 0
1179356_1 0.329 1.256 1 1 8 621 115 81 58 619 116 199 33 0
1180144_1 0.478 1.393 1 1 9 1353 275 83 52 1085 197 194 34 0
1180932_1 -0.329 0.796 1 1 10 367 119 81 28 546 133 195 34 0
1181708_1 -0.265 0.832 1 1 11 397 120 81 25 568 134 197 33 0
1182496_1 -0.217 0.860 1 1 12 258 90 81 30 402 101 201 47 0
1183572_1 0.665 1.586 1 1 13 1418 370 84 47 1029 196 207 59 0
1184348_1 0.042 1.029 1 1 14 397 105 82 27 523 127 224 48 0
1185136_1 -0.513 0.701 1 1 15 150 150 79 23 343 155 244 54 -50
1185924_1 -0.279 0.824 1 1 16 414 148 79 24 610 148 213 43 0
1186700_1 0.047 1.033 1 1 17 559 178 80 28 656 151 203 31 0
1187488_1 -0.394 0.761 1 1 18 343 170 79 28 542 278 203 39 0
1188564_1 -0.372 0.773 1 1 19 1690 332 81 27 2241 389 207 42 0
1189340_1 0.647 1.566 1 1 20 1050 328 80 25 819 200 214 39 0

Total number of rows: 21794

Table truncated, full table size 1319 Kbytes.




Supplementary data files not provided

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