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Sample GSM33860

Query DataSets for GSM33860

Status

Public on Oct 28, 2004

Title

HCC057_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC057

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39421

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC057
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	1.083	2.119	1	1	1	2456	706	186	346	1673	439	263	269	0
1174364_1	0.560	1.475	1	1	2	6724	942	179	71	6096	767	255	65	0
1175152_1	0.903	1.870	1	1	3	1895	410	186	72	1458	328	255	59	0
1175940_1	0.969	1.957	1	1	4	3114	790	186	80	2228	594	259	65	0
1176716_1	0.770	1.706	1	1	5	2537	622	182	69	2082	447	265	73	0
1177504_1	1.030	2.042	1	1	6	1958	383	183	73	1394	235	250	64	0
1178580_1	0.231	1.174	1	1	7	2987	509	196	95	3383	560	254	61	0
1179356_1	0.822	1.768	1	1	8	1391	460	186	96	1156	303	259	113	0
1180144_1	0.741	1.671	1	1	9	2315	485	173	72	1939	420	252	116	0
1180932_1	0.584	1.499	1	1	10	861	275	182	74	853	245	257	61	0
1181708_1	0.920	1.891	1	1	11	1260	416	185	79	1009	226	261	62	0
1182496_1	1.072	2.102	1	1	12	1276	374	182	75	950	291	265	59	0
1183572_1	-0.431	0.742	1	1	13	966	555	187	89	1645	963	263	97	0
1184348_1	0.414	1.332	1	1	14	675	332	180	71	745	187	256	72	0
1185136_1	-0.189	0.877	1	1	15	228	135	180	71	332	145	260	56	-50
1185924_1	0.586	1.501	1	1	16	932	274	193	78	909	258	261	59	0
1186700_1	0.738	1.668	1	1	17	1627	398	190	92	1396	283	262	59	0
1187488_1	0.223	1.167	1	1	18	778	293	184	70	932	243	262	68	0
1188564_1	0.038	1.026	1	1	19	3159	1781	194	219	4066	2387	264	444	0
1189340_1	0.012	1.008	1	1	20	716	264	195	116	927	243	247	241	0

Total number of rows: 21794

Table truncated, full table size 1349 Kbytes.

Supplementary data files not provided

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