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Sample GSM33861

Query DataSets for GSM33861

Status

Public on Oct 28, 2004

Title

HCC057_Cy5

Sample type

RNA

Channel 1

Source name

HCC057

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39420

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC057
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.077	0.948	1	1	1	1013	1026	187	133	1201	952	397	183	0
1174364_1	0.257	1.195	1	1	2	10486	1854	175	90	8340	1342	376	143	0
1175152_1	0.281	1.215	1	1	3	1011	427	196	119	1092	381	473	121	0
1175940_1	0.462	1.377	1	1	4	2026	584	174	84	1653	448	412	293	0
1176716_1	0.249	1.189	1	1	5	1760	488	173	103	1620	513	388	277	0
1177504_1	-0.280	0.823	1	1	6	1326	469	173	94	1652	404	360	110	0
1178580_1	0.466	1.381	1	1	7	4624	1022	164	95	3331	787	352	100	0
1179356_1	0.251	1.190	1	1	8	1269	415	165	89	1197	327	341	77	0
1180144_1	0.322	1.250	1	1	9	1959	621	173	152	1674	515	356	454	0
1180932_1	0.429	1.346	1	1	10	682	300	170	166	733	171	382	470	0
1181708_1	0.102	1.073	1	1	11	997	461	178	363	1110	422	406	517	0
1182496_1	0.342	1.267	1	1	12	781	417	185	98	828	458	394	106	0
1183572_1	1.183	2.271	1	1	13	1209	860	200	426	784	281	374	205	0
1184348_1	0.225	1.169	1	1	14	830	346	179	6191	851	197	337	6324	0
1185136_1	0.189	1.140	1	1	15	323	332	176	107	464	302	345	91	-50
1185924_1	0.202	1.150	1	1	16	868	368	170	95	895	262	335	106	0
1186700_1	-0.043	0.970	1	1	17	1038	344	181	96	1148	293	333	79	0
1187488_1	0.209	1.156	1	1	18	1830	574	168	97	1659	492	332	73	0
1188564_1	0.073	1.052	1	1	19	4582	2795	159	427	4220	2391	340	390	0
1189340_1	0.307	1.237	1	1	20	2268	500	160	84	1903	503	331	99	0

Total number of rows: 21794

Table truncated, full table size 1356 Kbytes.

Supplementary data files not provided

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