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Sample GSM33864 Query DataSets for GSM33864
Status Public on Oct 28, 2004
Title HCC059_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC059
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 39429

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC059
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 0.447 1.363 1 1 1 486 142 168 64 684 122 322 132 0
1174364_1 1.314 2.486 1 1 2 2694 1306 178 68 1929 625 359 113 0
1175152_1 -0.758 0.591 1 1 3 300 111 170 74 634 212 293 85 0
1175940_1 -0.415 0.750 1 1 4 454 165 165 58 876 202 278 55 0
1176716_1 0.050 1.035 1 1 5 526 136 165 57 821 168 280 55 0
1177504_1 0.754 1.686 1 1 6 668 166 168 62 753 145 293 71 0
1178580_1 0.532 1.446 1 1 7 1306 298 170 69 1526 352 307 105 0
1179356_1 -1.459 0.364 1 1 8 263 112 173 67 690 620 306 79 0
1180144_1 -0.386 0.766 1 1 9 366 111 179 70 745 167 366 113 0
1180932_1 -1.161 0.447 1 1 10 214 73 182 68 542 145 431 119 -50
1181708_1 0.752 1.684 1 1 11 301 419 187 73 516 170 411 131 -50
1182496_1 -1.452 0.366 1 1 12 216 60 179 68 520 124 363 118 -50
1183572_1 -0.582 0.668 1 1 13 374 138 179 88 803 237 350 157 0
1184348_1 -0.271 0.829 1 1 14 259 135 189 72 539 146 408 121 -50
1185136_1 0.186 1.138 1 1 15 208 78 186 67 395 118 365 108 -50
1185924_1 -0.479 0.718 1 1 16 323 85 187 64 634 111 340 82 0
1186700_1 -0.494 0.710 1 1 17 330 109 190 65 695 152 389 120 0
1187488_1 -1.108 0.464 1 1 18 247 135 186 67 591 133 387 147 -50
1188564_1 0.276 1.211 1 1 19 1647 1105 184 169 2232 1194 358 445 0
1189340_1 -0.469 0.723 1 1 20 388 130 184 83 827 201 389 386 0

Total number of rows: 21794

Table truncated, full table size 1340 Kbytes.




Supplementary data files not provided

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