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Sample GSM33866

Query DataSets for GSM33866

Status

Public on Oct 28, 2004

Title

HCC060_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC060

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 39433

Array Print: Hs-OperonV2-vB1.1p4-020503
Tissue_type: Hepatocellular Carcinoma
Sample: HCC060
Sample_Description: subgroup B

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.505	1.419	1	1	1	2584	1673	280	429	2477	1562	410	635	0
1174364_1	0.400	1.320	1	1	2	6437	2699	257	461	6342	2672	380	557	0
1175152_1	0.224	1.168	1	1	3	1816	1039	269	339	2078	1062	391	687	0
1175940_1	0.528	1.442	1	1	4	1784	416	250	104	1700	467	345	143	0
1176716_1	0.161	1.118	1	1	5	1799	478	233	89	2068	470	284	112	0
1177504_1	0.398	1.317	1	1	6	1514	437	224	96	1517	346	270	74	0
1178580_1	0.436	1.352	1	1	7	2733	522	218	85	2628	453	260	68	0
1179356_1	0.267	1.203	1	1	8	1174	616	215	80	1267	488	252	77	0
1180144_1	0.721	1.648	1	1	9	1450	728	215	85	1207	425	253	68	0
1180932_1	0.172	1.127	1	1	10	545	263	222	100	626	272	261	71	0
1181708_1	0.530	1.444	1	1	11	1586	1004	218	106	1461	1028	255	63	0
1182496_1	0.506	1.420	1	1	12	2382	1001	214	1517	2206	818	262	1463	0
1183572_1	0.408	1.327	1	1	13	782	402	213	1774	809	434	263	1759	0
1184348_1	0.360	1.284	1	1	14	829	511	217	75	864	521	257	59	0
1185136_1	0.484	1.398	1	1	15	320	322	208	72	352	273	250	54	-50
1185924_1	0.273	1.208	1	1	16	723	410	205	72	799	364	253	57	0
1186700_1	0.156	1.115	1	1	17	902	592	200	75	1063	658	261	64	0
1187488_1	-0.375	0.771	1	1	18	523	203	207	81	780	290	258	61	0
1188564_1	-0.402	0.757	1	1	19	2082	963	214	205	3405	1695	262	377	0
1189340_1	0.511	1.425	1	1	20	827	509	216	108	806	294	260	200	0

Total number of rows: 21794

Table truncated, full table size 1352 Kbytes.

Supplementary data files not provided

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