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Sample GSM33873

Query DataSets for GSM33873

Status

Public on Oct 28, 2004

Title

HCC063_Cy5

Sample type

RNA

Channel 1

Source name

HCC063

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 40982

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC063
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.658	0.634	1	1	1	745	306	161	105	1302	276	298	103	0
1174364_1	-0.270	0.829	1	1	2	3456	704	161	108	4629	757	301	104	0
1175152_1	-0.484	0.715	1	1	3	563	255	162	89	912	236	301	80	0
1175940_1	-0.186	0.879	1	1	4	913	317	144	87	1241	246	288	84	0
1176716_1	0.221	1.166	1	1	5	1641	484	146	90	1640	343	243	77	0
1177504_1	-0.077	0.948	1	1	6	1174	359	162	104	1395	236	232	76	0
1178580_1	0.518	1.432	1	1	7	3057	901	150	99	2445	622	233	134	0
1179356_1	-0.214	0.862	1	1	8	620	346	145	97	828	187	228	75	0
1180144_1	0.489	1.404	1	1	9	1127	508	145	88	1007	300	245	80	0
1180932_1	-0.790	0.578	1	1	10	363	199	156	90	644	135	254	81	0
1181708_1	-0.674	0.627	1	1	11	423	228	156	93	729	225	265	80	0
1182496_1	-1.707	0.306	1	1	12	230	113	158	93	524	111	268	77	0
1183572_1	1.257	2.389	1	1	13	2362	820	160	98	1282	338	278	77	0
1184348_1	-0.525	0.695	1	1	14	331	126	176	104	523	121	280	74	0
1185136_1	-1.792	0.289	1	1	15	207	104	185	97	354	154	271	79	-50
1185924_1	-0.649	0.638	1	1	16	370	190	168	93	617	162	272	83	0
1186700_1	-0.306	0.809	1	1	17	518	233	169	93	740	212	270	79	0
1187488_1	0.172	1.127	1	1	18	467	258	164	105	565	151	272	143	0
1188564_1	-0.662	0.632	1	1	19	1479	610	170	189	2527	635	270	252	0
1189340_1	0.188	1.139	1	1	20	706	391	178	187	776	257	271	211	0

Total number of rows: 21794

Table truncated, full table size 1366 Kbytes.

Supplementary data files not provided

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