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Sample GSM33874

Query DataSets for GSM33874

Status

Public on Oct 28, 2004

Title

HCC064_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC064

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 40988

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC064
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.159	0.895	1	1	1	11230	3431	245	919	15927	4835	260	362	0
1174364_1	-0.457	0.728	1	1	2	15760	4237	279	159	27402	6848	265	255	0
1175152_1	-0.207	0.866	1	1	3	5237	1240	263	158	7575	2043	242	165	0
1175940_1	-0.089	0.940	1	1	4	9430	2368	257	162	12685	3255	229	123	0
1176716_1	-0.199	0.871	1	1	5	8361	2193	250	119	12112	3669	222	112	0
1177504_1	0.037	1.026	1	1	6	5064	1392	241	324	6232	2344	228	206	0
1178580_1	-0.195	0.873	1	1	7	9104	1230	235	656	13205	2943	237	744	0
1179356_1	-0.278	0.825	1	1	8	4790	1279	227	524	7301	2023	237	666	0
1180144_1	-0.256	0.838	1	1	9	6777	2734	224	147	10233	4018	242	139	0
1180932_1	0.066	1.047	1	1	10	2025	1008	241	128	2416	1308	240	129	0
1181708_1	-0.012	0.992	1	1	11	2095	1110	240	119	2624	1442	236	141	0
1182496_1	-0.029	0.980	1	1	12	1438	1324	244	260	1792	1891	236	146	0
1183572_1	-0.619	0.651	1	1	13	1888	707	248	227	3459	1183	242	125	0
1184348_1	-0.119	0.921	1	1	14	1290	1111	252	128	1664	1804	225	99	0
1185136_1	-0.503	0.706	1	1	15	382	313	256	130	465	464	237	115	-50
1185924_1	-0.174	0.886	1	1	16	948	638	286	157	1187	666	233	143	0
1186700_1	0.566	1.480	1	1	17	1347	429	305	220	1139	407	240	155	0
1187488_1	-0.680	0.624	1	1	18	611	285	302	159	879	400	247	123	0
1188564_1	1.188	2.278	1	1	19	7065	1654	289	140	4049	1010	250	103	0
1189340_1	0.251	1.190	1	1	20	1562	768	298	198	1626	1306	270	126	0

Total number of rows: 21794

Table truncated, full table size 1398 Kbytes.

Supplementary data files not provided

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