GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Sample GSM33875

Query DataSets for GSM33875

Status

Public on Oct 28, 2004

Title

HCC064_Cy5

Sample type

RNA

Channel 1

Source name

HCC064

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 40987

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC064
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.477	1.392	1	1	1	3262	1281	157	91	2623	986	313	87	0
1174364_1	0.802	1.743	1	1	2	18948	4164	162	95	11482	3054	320	88	0
1175152_1	0.480	1.395	1	1	3	2483	857	152	91	2041	525	310	113	0
1175940_1	0.520	1.434	1	1	4	5233	1302	154	86	3967	1166	298	117	0
1176716_1	0.491	1.406	1	1	5	4057	1050	157	90	3177	720	304	93	0
1177504_1	0.149	1.109	1	1	6	3416	918	159	93	3338	895	296	95	0
1178580_1	0.401	1.321	1	1	7	7004	1447	148	95	5670	1583	294	94	0
1179356_1	0.499	1.413	1	1	8	2056	794	158	105	1681	689	290	91	0
1180144_1	0.811	1.755	1	1	9	2809	1286	147	93	1869	892	298	144	0
1180932_1	-0.017	0.988	1	1	10	658	446	140	93	849	391	306	114	0
1181708_1	0.273	1.208	1	1	11	969	871	157	100	992	627	296	98	0
1182496_1	0.317	1.246	1	1	12	554	458	163	92	616	191	291	99	0
1183572_1	0.845	1.797	1	1	13	2095	562	157	79	1413	342	296	99	0
1184348_1	0.569	1.484	1	1	14	739	486	153	91	699	284	290	93	0
1185136_1	0.575	1.490	1	1	15	234	178	152	115	346	170	289	104	-50
1185924_1	0.201	1.149	1	1	16	746	772	159	107	830	609	301	106	0
1186700_1	0.056	1.039	1	1	17	727	338	165	91	878	292	318	92	0
1187488_1	-0.032	0.978	1	1	18	450	235	179	103	611	191	324	98	0
1188564_1	-0.799	0.575	1	1	19	2204	1159	171	101	3976	1847	313	108	0
1189340_1	0.062	1.044	1	1	20	782	348	155	97	944	265	322	120	0

Total number of rows: 21794

Table truncated, full table size 1379 Kbytes.

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |