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Sample GSM33876 Query DataSets for GSM33876
Status Public on Oct 28, 2004
Title HCC065_Cy3
Sample type RNA
 
Channel 1
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name HCC065
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 40993

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC065
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.090 0.940 1 1 1 2809 717 344 213 3443 730 392 197 0
1174364_1 1.035 2.049 1 1 2 11515 2559 344 198 6717 1978 378 180 0
1175152_1 -0.249 0.842 1 1 3 1687 487 344 178 2218 564 362 159 0
1175940_1 -0.249 0.841 1 1 4 2104 589 332 183 2822 647 373 142 0
1176716_1 0.094 1.068 1 1 5 4684 795 332 220 5094 905 353 181 0
1177504_1 0.332 1.258 1 1 6 2500 549 339 198 2337 452 340 196 0
1178580_1 0.213 1.159 1 1 7 5382 1010 335 283 5401 1006 336 145 0
1179356_1 0.120 1.087 1 1 8 1984 480 327 289 2113 659 340 160 0
1180144_1 -0.056 0.962 1 1 9 2794 863 326 174 3327 758 344 165 0
1180932_1 -0.269 0.830 1 1 10 1403 376 326 174 1846 533 337 160 0
1181708_1 0.130 1.095 1 1 11 1544 534 313 155 1658 390 350 171 0
1182496_1 -0.250 0.841 1 1 12 1158 390 310 206 1502 515 329 115 0
1183572_1 0.328 1.255 1 1 13 2962 557 317 218 2780 588 329 144 0
1184348_1 0.128 1.093 1 1 14 1677 847 318 150 1766 933 320 136 0
1185136_1 0.157 1.115 1 1 15 1864 724 323 854 1944 657 337 561 0
1185924_1 0.088 1.063 1 1 16 1477 396 309 445 1595 453 317 330 0
1186700_1 0.051 1.036 1 1 17 1536 512 293 163 1708 769 313 207 0
1187488_1 -0.439 0.738 1 1 18 1422 488 293 134 2087 732 307 138 0
1188564_1 0.763 1.697 1 1 19 9335 2027 284 129 6513 1476 309 115 0
1189340_1 -0.085 0.943 1 1 20 2678 531 278 170 3268 688 307 143 0

Total number of rows: 21794

Table truncated, full table size 1390 Kbytes.




Supplementary data files not provided

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