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Sample GSM33877 Query DataSets for GSM33877
Status Public on Oct 28, 2004
Title HCC065_Cy5
Sample type RNA
 
Channel 1
Source name HCC065
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 40992

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC065
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.565 0.676 1 1 1 810 322 173 91 1172 300 232 85 0
1174364_1 -0.916 0.530 1 1 2 3612 1206 158 79 6724 1650 220 86 0
1175152_1 -0.443 0.736 1 1 3 622 212 159 80 847 261 219 74 0
1175940_1 -0.178 0.884 1 1 4 1055 324 154 80 1232 245 215 75 0
1176716_1 0.016 1.011 1 1 5 1552 402 158 78 1586 356 210 73 0
1177504_1 -1.112 0.462 1 1 6 624 207 160 101 1194 242 193 68 0
1178580_1 -0.335 0.793 1 1 7 2511 600 157 90 3156 850 193 83 0
1179356_1 -1.178 0.442 1 1 8 553 216 149 84 1105 290 193 88 0
1180144_1 -0.318 0.802 1 1 9 881 260 152 78 1106 293 199 75 0
1180932_1 -1.127 0.458 1 1 10 299 161 148 108 522 223 193 266 0
1181708_1 -1.163 0.447 1 1 11 275 184 147 100 481 185 195 236 0
1182496_1 -1.711 0.306 1 1 12 204 92 140 72 411 172 202 87 0
1183572_1 -0.671 0.628 1 1 13 491 196 141 80 755 231 199 74 0
1184348_1 -0.798 0.575 1 1 14 274 110 146 87 420 133 198 69 0
1185136_1 -0.558 0.679 1 1 15 207 116 158 86 272 149 200 70 -50
1185924_1 -0.536 0.690 1 1 16 346 179 160 84 476 155 207 72 0
1186700_1 -1.073 0.475 1 1 17 296 144 155 89 501 188 205 75 0
1187488_1 -0.336 0.792 1 1 18 314 152 152 79 407 144 203 89 0
1188564_1 -1.221 0.429 1 1 19 1502 662 149 73 3340 1434 194 82 0
1189340_1 -0.105 0.930 1 1 20 507 205 151 78 577 209 195 71 0

Total number of rows: 21794

Table truncated, full table size 1365 Kbytes.




Supplementary data files not provided

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