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Sample GSM33878

Query DataSets for GSM33878

Status

Public on Oct 28, 2004

Title

HCC066_Cy3

Sample type

RNA

Channel 1

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Channel 2

Source name

HCC066

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 40997

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC066
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	0.690	1.613	1	1	1	1637	480	139	136	1260	490	169	101	0
1174364_1	1.094	2.135	1	1	2	7525	1542	134	132	4231	954	164	100	0
1175152_1	-0.544	0.686	1	1	3	610	251	126	76	996	329	167	74	0
1175940_1	0.032	1.022	1	1	4	1096	356	131	77	1271	319	162	64	0
1176716_1	0.082	1.058	1	1	5	1803	515	132	74	2016	446	161	83	0
1177504_1	0.122	1.088	1	1	6	1015	298	135	73	1107	248	157	93	0
1178580_1	0.006	1.004	1	1	7	2882	677	131	105	3373	725	154	70	0
1179356_1	-0.192	0.875	1	1	8	788	349	121	111	1053	293	158	66	0
1180144_1	-0.179	0.884	1	1	9	806	304	126	85	1061	357	157	67	0
1180932_1	0.011	1.007	1	1	10	392	226	127	84	464	169	155	58	0
1181708_1	-0.410	0.753	1	1	11	366	196	127	74	529	213	156	64	0
1182496_1	-0.593	0.663	1	1	12	226	129	125	76	341	112	162	61	0
1183572_1	-0.862	0.550	1	1	13	852	365	137	95	1693	620	166	82	0
1184348_1	-0.622	0.650	1	1	14	312	154	146	102	477	280	177	68	0
1185136_1	-0.130	0.914	1	1	15	204	135	148	85	265	175	193	61	-50
1185924_1	0.509	1.423	1	1	16	491	217	153	87	463	171	184	60	0
1186700_1	0.325	1.253	1	1	17	538	239	153	88	544	187	183	73	0
1187488_1	-0.561	0.678	1	1	18	309	150	144	81	467	187	181	62	0
1188564_1	0.885	1.846	1	1	19	3738	748	148	158	2462	598	178	164	0
1189340_1	0.154	1.113	1	1	20	892	333	137	154	963	303	166	163	0

Total number of rows: 21794

Table truncated, full table size 1356 Kbytes.

Supplementary data files not provided

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