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Sample GSM33881

Query DataSets for GSM33881

Status

Public on Oct 28, 2004

Title

HCC067_Cy5

Sample type

RNA

Channel 1

Source name

HCC067

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 36342

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC067
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.691	0.619	1	1	1	427	157	91	44	820	208	218	53	0
1174364_1	0.126	1.092	1	1	2	3971	633	95	44	4154	672	214	59	0
1175152_1	-0.162	0.894	1	1	3	456	199	95	43	668	116	220	59	0
1175940_1	0.001	1.001	1	1	4	641	230	97	47	838	233	235	60	0
1176716_1	0.346	1.271	1	1	5	997	261	98	41	1027	183	242	62	0
1177504_1	-0.192	0.875	1	1	6	585	165	96	44	857	153	237	58	0
1178580_1	1.167	2.245	1	1	7	7562	1198	99	47	3922	723	233	56	0
1179356_1	-0.485	0.714	1	1	8	383	124	92	44	682	144	230	58	0
1180144_1	-0.012	0.992	1	1	9	640	232	94	44	841	218	230	59	0
1180932_1	0.600	1.516	1	1	10	581	322	96	43	584	160	229	60	0
1181708_1	0.265	1.202	1	1	11	412	178	99	46	525	142	236	62	0
1182496_1	-1.208	0.433	1	1	12	210	97	100	47	520	107	238	60	0
1183572_1	0.991	1.987	1	1	13	1151	272	105	47	822	149	238	62	0
1184348_1	-0.872	0.546	1	1	14	260	92	98	44	557	128	228	58	0
1185136_1	-1.006	0.498	1	1	15	132	89	97	57	301	149	223	59	-50
1185924_1	-0.312	0.805	1	1	16	386	116	92	54	622	159	217	57	0
1186700_1	0.903	1.869	1	1	17	925	318	91	101	709	191	214	168	0
1187488_1	-0.137	0.910	1	1	18	314	124	91	42	487	114	215	58	0
1188564_1	-0.879	0.544	1	1	19	1736	301	94	45	3571	590	221	55	0
1189340_1	1.684	3.213	1	1	20	1905	338	92	43	840	211	214	55	0

Total number of rows: 21775

Table truncated, full table size 1338 Kbytes.

Supplementary data files not provided

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