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Sample GSM33887

Query DataSets for GSM33887

Status

Public on Oct 28, 2004

Title

HCC070_Cy5

Sample type

RNA

Channel 1

Source name

HCC070

Organism

Extracted molecule

total RNA

Channel 2

Source name

Pooled Normal Liver

Organism

Extracted molecule

total RNA

Description

mAdb experiment ID: 41000

Array Print: Hs-OperonV2-vB1.1p5-031303
Tissue_type: Hepatocellular Carcinoma
Sample: HCC070
Sample_Description: subgroup A

Submission date

Oct 27, 2004

Last update date

May 27, 2005

Contact name

Snorri S Thorgeirsson

E-mail(s)

snorri_s_thorgeirsson@nih.gov

Phone

(301) 496-5688 x204

Fax

(301) 496-0734

URL

http://neoplasia.nci.nih.gov/

Organization name

National Cancer institute/NIH

Department

Laboratory of Experimental Carcinogenesis

Lab

Cellular and Molecular Biology Section

Street address

37 Convent Dr. # 4146

City

Bethesda

State/province

MD

ZIP/Postal code

20892

Country

USA

Platform ID

Series (1)

Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF	NCI mAdb well id plus replicate number
VALUE	log ratio (log2 of PRE_VALUE)
PRE_VALUE	Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block	Array block location
Slide_column	Array column location
Slide_row	Array row location
CH1_MEAN	Sample 1 (Red Channel) mean Intensity
CH1_SD	Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median	Sample 1 (Red Channel) median Background Level
CH1_BKD_SD	Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN	Sample 2 (Green Channel) mean Intensity
CH2_SD	Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median	Sample 2 (Green Channel) median Background Level
CH2_BKD_SD	Sample 2 (Green Channel) Background Standard Deviation
Flag	Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF	VALUE	PRE_VALUE	Slide_block	Slide_column	Slide_row	CH1_MEAN	CH1_SD	CH1_BKD_median	CH1_BKD_SD	CH2_MEAN	CH2_SD	CH2_BKD_median	CH2_BKD_SD	Flag
1173588_1	-0.009	0.994	1	1	1	1618	536	171	107	1787	451	247	398	0
1174364_1	0.548	1.462	1	1	2	7585	2386	173	929	5611	1909	248	479	0
1175152_1	-0.014	0.990	1	1	3	933	397	184	895	1039	347	239	455	0
1175940_1	0.350	1.274	1	1	4	1455	508	183	170	1303	276	247	101	0
1176716_1	0.478	1.393	1	1	5	3392	933	171	159	2702	651	256	106	0
1177504_1	0.045	1.032	1	1	6	1524	404	181	3150	1639	320	262	4929	0
1178580_1	0.133	1.097	1	1	7	3481	969	191	324	3435	902	261	3431	0
1179356_1	0.433	1.350	1	1	8	1677	482	188	149	1427	363	260	114	0
1180144_1	0.187	1.139	1	1	9	1903	481	197	209	1868	543	283	174	0
1180932_1	0.016	1.011	1	1	10	822	363	196	211	931	257	276	173	0
1181708_1	-0.253	0.839	1	1	11	710	309	189	162	935	295	278	118	0
1182496_1	-0.446	0.734	1	1	12	488	232	198	134	696	203	278	112	0
1183572_1	0.791	1.730	1	1	13	2824	613	216	132	1878	491	283	114	0
1184348_1	-0.198	0.872	1	1	14	697	369	201	131	881	295	279	114	0
1185136_1	-0.076	0.948	1	1	15	744	294	216	141	881	222	292	144	0
1185924_1	0.050	1.035	1	1	16	1258	469	202	126	1368	382	289	121	0
1186700_1	0.059	1.042	1	1	17	1263	465	212	135	1355	350	288	122	0
1187488_1	0.610	1.527	1	1	18	1036	461	199	133	864	259	284	106	0
1188564_1	0.257	1.195	1	1	19	9662	2757	195	129	8669	1847	288	92	0
1189340_1	0.145	1.105	1	1	20	2025	666	210	127	2019	590	282	95	0

Total number of rows: 21794

Table truncated, full table size 1372 Kbytes.

Supplementary data files not provided

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