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Sample GSM33889 Query DataSets for GSM33889
Status Public on Oct 28, 2004
Title HCC071_Cy5
Sample type RNA
 
Channel 1
Source name HCC071
Organism Homo sapiens
Extracted molecule total RNA
 
Channel 2
Source name Pooled Normal Liver
Organism Homo sapiens
Extracted molecule total RNA
 
 
Description mAdb experiment ID: 36353

Array Print: Hs-OperonV2-VB1.0p1-103102
Tissue_type: Hepatocellular Carcinoma
Sample: HCC071
Sample_Description: subgroup B
 
Submission date Oct 27, 2004
Last update date May 27, 2005
Contact name Snorri S Thorgeirsson
E-mail(s) snorri_s_thorgeirsson@nih.gov
Phone (301) 496-5688 x204
Fax (301) 496-0734
URL http://neoplasia.nci.nih.gov/
Organization name National Cancer institute/NIH
Department Laboratory of Experimental Carcinogenesis
Lab Cellular and Molecular Biology Section
Street address 37 Convent Dr. # 4146
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Platform ID GPL1528
Series (1)
GSE1898 Human Hepatocellular Carcinoma study

Data table header descriptions
ID_REF NCI mAdb well id plus replicate number
VALUE log ratio (log2 of PRE_VALUE)
PRE_VALUE Calibrated Ratio (Sample_target_source1 / Sample_target_source2 )
Slide_block Array block location
Slide_column Array column location
Slide_row Array row location
CH1_MEAN Sample 1 (Red Channel) mean Intensity
CH1_SD Sample 1 (Red Channel) Standard Deviation
CH1_BKD_median Sample 1 (Red Channel) median Background Level
CH1_BKD_SD Sample 1 (Red Channel) Background Standard Deviation
CH2_MEAN Sample 2 (Green Channel) mean Intensity
CH2_SD Sample 2 (Green Channel) Standard Deviation
CH2_BKD_median Sample 2 (Green Channel) median Background Level
CH2_BKD_SD Sample 2 (Green Channel) Background Standard Deviation
Flag Quality flag 0->good, -50->Not found, -100->Bad

Data table
ID_REF VALUE PRE_VALUE Slide_block Slide_column Slide_row CH1_MEAN CH1_SD CH1_BKD_median CH1_BKD_SD CH2_MEAN CH2_SD CH2_BKD_median CH2_BKD_SD Flag
1173588_1 -0.468 0.723 1 1 1 571 200 182 88 795 169 245 56 0
1174364_1 -0.081 0.945 1 1 2 3879 1196 194 86 4233 1088 247 55 0
1175152_1 -0.695 0.618 1 1 3 461 175 191 77 694 181 247 54 0
1175940_1 0.816 1.761 1 1 4 1096 379 185 71 779 163 250 59 0
1176716_1 0.170 1.125 1 1 5 1152 276 178 84 1129 225 244 54 0
1177504_1 -0.163 0.893 1 1 6 761 191 187 98 903 163 246 66 0
1178580_1 -0.150 0.901 1 1 7 3717 950 196 99 4245 862 250 67 0
1179356_1 -0.603 0.658 1 1 8 368 158 198 89 511 98 247 54 0
1180144_1 0.292 1.224 1 1 9 701 242 192 81 671 170 246 52 0
1180932_1 -0.437 0.739 1 1 10 383 164 193 83 509 147 246 53 0
1181708_1 -0.698 0.616 1 1 11 363 107 202 289 519 159 252 225 0
1182496_1 -0.490 0.712 1 1 12 357 127 194 78 485 95 251 56 0
1183572_1 0.184 1.136 1 1 13 695 208 187 73 701 210 244 52 0
1184348_1 -0.487 0.714 1 1 14 379 156 194 78 516 100 251 54 0
1185136_1 -0.416 0.750 1 1 15 367 140 202 80 487 76 262 58 0
1185924_1 -0.259 0.836 1 1 16 578 196 197 81 717 219 251 55 0
1186700_1 0.188 1.139 1 1 17 1307 364 188 80 1248 312 244 52 0
1187488_1 -0.264 0.833 1 1 18 407 171 183 77 526 120 251 61 0
1188564_1 -0.593 0.663 1 1 19 1986 571 197 87 3010 687 252 63 0
1189340_1 0.268 1.204 1 1 20 806 302 189 79 769 213 245 52 0

Total number of rows: 21775

Table truncated, full table size 1351 Kbytes.




Supplementary data files not provided

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